Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51980 171 / 2e-51 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G25440 168 / 2e-50 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT5G49200 132 / 7e-37 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT5G40880 124 / 3e-33 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) AT3G51930 58 / 8e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT4G05410 52 / 6e-08 YAO YAOZHE, Transducin/WD40 repeat-like superfamily protein (.1) AT4G21130 52 / 7e-08 EMB2271 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 52 / 8e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 50 / 2e-07 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 47 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021640 [exp] 305 / 7e-107 AT4G25440 185 / 7e-57 zinc finger WD40 repeat protein 1 (.1) Lus10021648 [exp] 305 / 4e-103 AT4G25440 321 / 1e-105 zinc finger WD40 repeat protein 1 (.1) Lus10021656 [exp] 278 / 2e-92 AT4G25440 329 / 9e-109 zinc finger WD40 repeat protein 1 (.1) Lus10034716 [exp] 247 / 4e-82 AT5G51980 217 / 5e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032062 [exp] 235 / 3e-77 AT4G25440 212 / 3e-65 zinc finger WD40 repeat protein 1 (.1) Lus10014595 [exp] 245 / 7e-77 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10021655 [exp] 234 / 2e-76 AT4G25440 169 / 3e-48 zinc finger WD40 repeat protein 1 (.1) Lus10032066 [exp] 233 / 3e-75 AT4G25440 343 / 5e-115 zinc finger WD40 repeat protein 1 (.1) Lus10033255 [exp] 192 / 7e-59 AT5G51980 285 / 3e-91 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G077800 [exp] 179 / 1e-53 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G137200 [exp] 169 / 2e-50 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.012G134800 [exp] 169 / 2e-50 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.007G107900 [exp] 54 / 2e-08 AT4G21130 505 / 2e-176 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G061000 [exp] 53 / 4e-08 AT4G21130 513 / 9e-180 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 51 / 9e-08 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 51 / 9e-08 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G202700 [exp] 51 / 1e-07 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G022900 [exp] 51 / 1e-07 AT3G51930 523 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 48 / 2e-06 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10001652 pacid=23175235 polypeptide=Lus10001652 locus=Lus10001652.g ID=Lus10001652.BGIv1.0 annot-version=v1.0 ATGGAGATTGTGTTTGCTGCCGCTCAAGATGGTACCATTTTGGCGTGGAAGACTAGTACCGGCGAGCACGGAAATCGTTTCCAGCCAACTGCATCACTGA TTGGCCATACAAGTGCAGTTATTTCCCTGAGATTTGGAGCAGGTAGTAGGGTGTATTCGGGTTCCATAGATGGAACCATCAAAGTTTGGGATGGTAGAAT TTCTCAATGCATACAAACATTAAAGGGGCATGATGATGCAGTGACGTGTCTCCTCTGCTATAGATGCTACTTGTTGTCCTGCTCACTGGATAAGAAGATA AAAGTATGGGGTCACAATAAAGAAAGAAGACTGGAAGTTGAATATACCCATGAAGAAGCAGATGGTGCTCTAGCTTTGTGTGGAATAGAAGAGTGTGGGA AAGAGATGCTGTTGTGCTCTTCGAACAATGATTCGGTTGGATTGTATGAGCTTCCATCATTTGTTGAGAAAGGGAGAATGTACTCGAAATGTGAAGTAAG GAGCTTGGGAGTAGGTACTGAAGGAATGTTCTTCACTGGAGATGCTTCTGGAATGGTGACTGTATGGAAACTGCAGAAGAAGCGAAAATGGAGCAGTATA GGTATAGTTTGA
AA sequence Show only first row Show all	>Lus10001652 pacid=23175235 polypeptide=Lus10001652 locus=Lus10001652.g ID=Lus10001652.BGIv1.0 annot-version=v1.0 MEIVFAAAQDGTILAWKTSTGEHGNRFQPTASLIGHTSAVISLRFGAGSRVYSGSIDGTIKVWDGRISQCIQTLKGHDDAVTCLLCYRCYLLSCSLDKKI KVWGHNKERRLEVEYTHEEADGALALCGIEECGKEMLLCSSNNDSVGLYELPSFVEKGRMYSKCEVRSLGVGTEGMFFTGDASGMVTVWKLQKKRKWSSI GIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10001652 [exp]	0	1
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001418 [exp]	2.2	0.8596
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012339 [exp]	5.8	0.8437
AT2G18540			RmlC-like cupins superfamily p...		Lus10041722 [exp]	6.7	0.8089
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10002628 [exp]	12.7	0.8082
AT3G12350			F-box family protein (.1.2)		Lus10010607 [exp]	12.8	0.7821
AT1G70420			Protein of unknown function (D...		Lus10013011 [exp]	16.7	0.8200
AT5G58070		ATTIL	temperature-induced lipocalin ...		Lus10019048 [exp]	18.3	0.8032
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10019490 [exp]	18.7	0.7861
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	19.1	0.8041
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10042962 [exp]	20.0	0.8139

Compare expression of checked genes

Lus10001652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.