Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61410 457 / 3e-164 RPE, EMB2728 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) AT3G01850 163 / 1e-49 Aldolase-type TIM barrel family protein (.1.2) AT1G63290 153 / 2e-45 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021627 [exp] 499 / 1e-180 AT5G61410 452 / 2e-162 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10015715 [exp] 460 / 2e-165 AT5G61410 457 / 4e-164 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10019083 [exp] 253 / 3e-84 AT5G61410 265 / 3e-89 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10035219 [exp] 151 / 5e-43 AT3G01850 372 / 6e-130 Aldolase-type TIM barrel family protein (.1.2) Lus10032052 [exp] 147 / 7e-43 AT1G63290 362 / 4e-128 Aldolase-type TIM barrel family protein (.1) Lus10019082 [exp] 141 / 9e-43 AT5G61410 136 / 4e-41 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062100 [exp] 459 / 2e-165 AT5G61410 494 / 4e-179 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Potri.001G332700 [exp] 167 / 7e-51 AT3G01850 387 / 2e-138 Aldolase-type TIM barrel family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00834 [flax] [poplar] Ribul_P_3_epim Ribulose-phosphate 3 epimerase family
Representative CDS sequence Show only first row Show all	>Lus10001653 pacid=23175241 polypeptide=Lus10001653 locus=Lus10001653.g ID=Lus10001653.BGIv1.0 annot-version=v1.0 ATGTCCACTGCTTCTTTATGTTGCTCGGCTCGGATCAATGGATTAGGAGGTGGCCTTCGGATTCATAGAAACAATCCTTTTCAACAAACTTCATTTCCTC TTCGCAGGAGAGCAGTTAAGTCGGTCGTCAGGGCATCCCGTGTTGATAAGTTCTCAAAAAGTGACATCATTGTTTCCCCGTCCATCCTTTCTGCTAATTT CGCAAAGTTGGGAGAACAGGTAAAAGCAGTCGAGCTGGCAGGATGTGATTGGATTCATGTTGATGTTATGGATGGTCGTTTTGTGCCAAACATCACAATC GGACCTCTTGTGGTTGATGCCTTGCGTCCTGTCACAGACCTTCCCTTAGATGTGCACTTGATGATTGTGGAACCTGATCAAAGGGTGCCAGATTTTATCA AGGCAGGAGCTGACATTGTCAGTGTTCACTGTGAACAATCTTCCACCATTCATTTGCATCGTACTGTAAATCAGATAAAAAGTCTTGGAGCCAAAGCTGG AGTTGTCCTTAACCCCGGGACCCCGTTGACTGCTATAGAGTATATTCTTGATGTGGTTGATCTCGTCTTGATTATGTCGGTGAACCCTGGATTCGGTGGG CAGAGCTTCATTGAAAGCCAAGTAAAGAAGATTTCTGACTTGAGGAGATTGTGTGTTGAGAAGGGAGTGAACCCATGGATAGAGGTCGATGGTGGCGTTG GTCCCAAAAATGCGTACAAGGTTATCGAGGCTGGAGCTAATGCTTTAGTTGCTGGTTCCGCTGTATTTGGAGCCCCAGATTACGCTGAAGCAATAAAAGG AATCAAAACCAGCACCCGGCCAGTTGCAGTACCAGCATGA
AA sequence Show only first row Show all	>Lus10001653 pacid=23175241 polypeptide=Lus10001653 locus=Lus10001653.g ID=Lus10001653.BGIv1.0 annot-version=v1.0 MSTASLCCSARINGLGGGLRIHRNNPFQQTSFPLRRRAVKSVVRASRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI GPLVVDALRPVTDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPGTPLTAIEYILDVVDLVLIMSVNPGFGG QSFIESQVKKISDLRRLCVEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSTRPVAVPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10001653 [exp]	0	1
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10021627 [exp]	1.0	0.9722
AT2G35260			unknown protein		Lus10040089 [exp]	2.0	0.9316
AT2G35260			unknown protein		Lus10030958 [exp]	8.7	0.9110
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10022479 [exp]	8.9	0.9195
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10016783 [exp]	9.3	0.9233
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10002710 [exp]	11.0	0.9022
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10012591 [exp]	16.3	0.9026
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10018961 [exp]	17.6	0.8958
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031744 [exp]	18.3	0.9052
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10022514 [exp]	19.2	0.8553

Compare expression of checked genes

Lus10001653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.