Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74410 180 / 1e-56 RING/U-box superfamily protein (.1) AT4G35840 94 / 3e-23 RING/U-box superfamily protein (.1) AT2G17730 93 / 1e-22 NIP2 NEP-interacting protein 2 (.1.2) AT5G66070 92 / 1e-22 RING/U-box superfamily protein (.1.2) AT3G20395 77 / 9e-17 RING/U-box superfamily protein (.1) AT5G05280 71 / 4e-15 RING/U-box superfamily protein (.1) AT5G01880 70 / 7e-15 RING/U-box superfamily protein (.1) AT3G10910 69 / 3e-14 RING/U-box superfamily protein (.1) AT2G20030 70 / 1e-13 RING/U-box superfamily protein (.1) AT1G72310 69 / 2e-13 ATL3 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021628 [exp] 369 / 2e-130 AT1G74410 250 / 5e-84 RING/U-box superfamily protein (.1) Lus10028406 [exp] 96 / 1e-23 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10041859 [exp] 96 / 1e-23 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10024405 [exp] 68 / 7e-14 AT4G17905 95 / 9e-24 RING/U-box superfamily protein (.1) Lus10006493 [exp] 68 / 3e-13 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10021524 [exp] 67 / 4e-13 AT3G20395 170 / 7e-53 RING/U-box superfamily protein (.1) Lus10005617 [exp] 64 / 5e-13 AT5G42200 108 / 6e-31 RING/U-box superfamily protein (.1) Lus10025338 [exp] 66 / 6e-13 AT4G17905 99 / 4e-25 RING/U-box superfamily protein (.1) Lus10034953 [exp] 67 / 1e-12 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108200 [exp] 97 / 4e-24 AT4G35840 369 / 7e-131 RING/U-box superfamily protein (.1) Potri.007G061400 [exp] 96 / 1e-23 AT2G17730 351 / 8e-124 NEP-interacting protein 2 (.1.2) Potri.001G435800 [exp] 82 / 8e-19 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 72 / 2e-15 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.010G010500 [exp] 69 / 1e-13 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.003G075200 [exp] 67 / 1e-13 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1) Potri.002G017400 [exp] 67 / 2e-13 AT5G42200 154 / 2e-48 RING/U-box superfamily protein (.1) Potri.011G063100 [exp] 67 / 3e-13 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) Potri.005G244500 [exp] 66 / 3e-13 AT5G42200 149 / 3e-46 RING/U-box superfamily protein (.1) Potri.008G054200 [exp] 66 / 3e-13 AT1G20823 80 / 6e-19 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10001654 pacid=23175242 polypeptide=Lus10001654 locus=Lus10001654.g ID=Lus10001654.BGIv1.0 annot-version=v1.0 ATGGATGTTGCGAGTAACTGCGACTGTAGCACCGCCGAATCCTGTCCCGTCTGCAGCGGATATAATAATAGCACGGAGGGCCAATTCATGTCGTTAATGT CGGCTGTGGTTGAATACCAAGGGAATCGAGTTCTTGACAGCGTCCCCAGAATTGTCGCCGGAGCCATCTCCGGCGCCCTTACTGGCCTTTTCGCTATAGC TGGAGCTTGCACGGGAGCAATTACTGGGGCGTTTGCAGGCAGAGCTGCGGATTGTGGTGTTCTTAGGGGAGCTGGGTTAGGAGCTGTTGCTGGTGCTGTA CTTTCTGTTGAGGTTTTAGAAGCTTCTCGTGCTTACTGGGGTTTGGAGCAGTCTGCTTCTCGAGGACCTTCCTCTATGGCAGATTTCCTAGAAGAGCTGT TCCGAGAGAGGTTTGTTGATCATGAGTTTACACCAGCAATGTTGACTGCTTACCATTGGCAGATATCCAACAGCAACACAAACAACCAAGAGACGAACGA GGCTCACGAGGAAGTCGTAGGATCGAGTAGAGGGCTATCAGGAGAGTCACTTGACAAGCTCCCATGTCACGAGATCAAGGCTACGCAAACTATCTTCTGC ACTATATGCTTACAGGATATTGGGAAAGGGGAGGTGGCTCGAAGCTTACCAAAGTGTCAACACAGCTTCCACATGGCCTGTGTGGATAAGTGGCTTGTAA GACATGGTTCTTGTCCAGTTTGTCGCCAAGATGTATAG
AA sequence Show only first row Show all	>Lus10001654 pacid=23175242 polypeptide=Lus10001654 locus=Lus10001654.g ID=Lus10001654.BGIv1.0 annot-version=v1.0 MDVASNCDCSTAESCPVCSGYNNSTEGQFMSLMSAVVEYQGNRVLDSVPRIVAGAISGALTGLFAIAGACTGAITGAFAGRAADCGVLRGAGLGAVAGAV LSVEVLEASRAYWGLEQSASRGPSSMADFLEELFRERFVDHEFTPAMLTAYHWQISNSNTNNQETNEAHEEVVGSSRGLSGESLDKLPCHEIKATQTIFC TICLQDIGKGEVARSLPKCQHSFHMACVDKWLVRHGSCPVCRQDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74410			RING/U-box superfamily protein...		Lus10001654 [exp]	0	1
AT5G27290			unknown protein		Lus10033822 [exp]	1.4	0.9618
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10002142 [exp]	2.4	0.9544
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10041956 [exp]	3.9	0.9452
AT3G17930			unknown protein		Lus10026379 [exp]	6.9	0.9358
AT3G18870			Mitochondrial transcription te...		Lus10042342 [exp]	7.7	0.9134
AT2G03420			unknown protein		Lus10036810 [exp]	10.2	0.9301
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10025809 [exp]	11.2	0.9320
AT1G60230			Radical SAM superfamily protei...		Lus10000081 [exp]	11.2	0.9165
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10013642 [exp]	11.6	0.9341
AT1G80380			P-loop containing nucleoside t...		Lus10018910 [exp]	12.2	0.9086

Compare expression of checked genes

Lus10001654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.