Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66720 127 / 7e-35 Protein phosphatase 2C family protein (.1.2) AT4G16580 126 / 4e-34 Protein phosphatase 2C family protein (.1) AT2G30170 103 / 2e-27 Protein phosphatase 2C family protein (.1.2) AT4G33500 88 / 5e-20 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014413 [exp] 139 / 1e-39 AT4G16580 390 / 4e-134 Protein phosphatase 2C family protein (.1) Lus10023916 [exp] 138 / 5e-39 AT4G16580 384 / 1e-130 Protein phosphatase 2C family protein (.1) Lus10010797 [exp] 125 / 2e-34 AT4G16580 469 / 9e-165 Protein phosphatase 2C family protein (.1) Lus10016309 [exp] 127 / 4e-34 AT4G16580 542 / 0.0 Protein phosphatase 2C family protein (.1) Lus10031355 [exp] 108 / 2e-28 AT2G30170 352 / 3e-122 Protein phosphatase 2C family protein (.1.2) Lus10010968 [exp] 107 / 5e-28 AT2G30170 364 / 9e-127 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G021300 [exp] 158 / 6e-47 AT4G16580 184 / 8e-54 Protein phosphatase 2C family protein (.1) Potri.001G381000 [exp] 150 / 9e-45 AT5G66720 197 / 4e-60 Protein phosphatase 2C family protein (.1.2) Potri.011G102200 [exp] 142 / 4e-42 AT4G16580 191 / 4e-58 Protein phosphatase 2C family protein (.1) Potri.011G013000 [exp] 129 / 4e-37 AT4G16580 175 / 6e-52 Protein phosphatase 2C family protein (.1) Potri.014G042800 [exp] 132 / 4e-36 AT4G16580 522 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G125700 [exp] 123 / 3e-33 AT4G16580 373 / 3e-126 Protein phosphatase 2C family protein (.1) Potri.007G028900 [exp] 120 / 3e-32 AT5G66720 405 / 1e-139 Protein phosphatase 2C family protein (.1.2) Potri.001G282500 [exp] 99 / 1e-24 AT2G30170 382 / 1e-133 Protein phosphatase 2C family protein (.1.2) Potri.001G089201 [exp] 83 / 1e-19 AT4G16580 156 / 8e-46 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF07228 [flax] [poplar] SpoIIE Stage II sporulation protein E (SpoIIE)
Representative CDS sequence Show only first row Show all	>Lus10001655 pacid=23175236 polypeptide=Lus10001655 locus=Lus10001655.g ID=Lus10001655.BGIv1.0 annot-version=v1.0 ATGGCACCGAACACTCTGAAAATCGACCCAGGCGAATACTCCGAGGAACTGATGATGAACGCCCTCGCCGCACTCTACGTCCACGATTCCGACGTAGATC CGTTGAAAATCCTGAATTCGGCTCACTCCCAAACTAAAAAGCCAGGGGCTTCAACCGCCTGCTTAATCGCCTTAGTCGGCGACGAATTGCGGTTCGCGAA CATCGGCGACAGCGGATTCAAGGTGTTTCGAAACAATTCGGTGGTGTTTGAGTCGCCGATTCAGCAGCTAGGGGTCAATCAGCCGGCGCAATTGGACGCC CAGCGTTGGCTGAAGGCGGTGGAGGGGAGAGCGATAGTGGAGGCCGGAGACATCGTTGTGGCCGGGACCGACGGTTTGTTCGACAACATGCATTGTTGGG AGATTGAGAAGATTCTGGAAGAAGGCAGGGATTTGGGGACGGAGGATTTGGCCATAGCAATTGGACTAACGGCGTTCGGAAATTCAATGGATGTAACGTA TGAGTCGCCTTTTGCAATAGAAATGCGGAAGCACGGGATAGAGTTCGGAGGAGGGAAGAGGGACGATATCACGGTGGTTGTTGGCCGGATTCAGCCCCTC TCCGATAACGCCGGCCAAGATGGCTGA
AA sequence Show only first row Show all	>Lus10001655 pacid=23175236 polypeptide=Lus10001655 locus=Lus10001655.g ID=Lus10001655.BGIv1.0 annot-version=v1.0 MAPNTLKIDPGEYSEELMMNALAALYVHDSDVDPLKILNSAHSQTKKPGASTACLIALVGDELRFANIGDSGFKVFRNNSVVFESPIQQLGVNQPAQLDA QRWLKAVEGRAIVEAGDIVVAGTDGLFDNMHCWEIEKILEEGRDLGTEDLAIAIGLTAFGNSMDVTYESPFAIEMRKHGIEFGGGKRDDITVVVGRIQPL SDNAGQDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66720			Protein phosphatase 2C family ...		Lus10001655 [exp]	0	1
AT5G03620			Subtilisin-like serine endopep...		Lus10035599 [exp]	47.0	0.5885
AT5G37810		NIP4;1, NLM4	NOD26-LIKE MIP 4, NOD26-like i...		Lus10035999 [exp]	75.3	0.5792

Compare expression of checked genes

Lus10001655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.