Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75220 675 / 0 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT1G19450 669 / 0 Major facilitator superfamily protein (.1) AT2G48020 363 / 1e-121 Major facilitator superfamily protein (.1.2) AT5G18840 352 / 7e-117 Major facilitator superfamily protein (.1) AT1G54730 348 / 1e-115 Major facilitator superfamily protein (.1.2.3) AT3G05150 328 / 6e-108 Major facilitator superfamily protein (.1) AT1G08930 328 / 1e-107 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT5G27360 316 / 4e-103 SFP2 Major facilitator superfamily protein (.1) AT5G27350 316 / 6e-103 SFP1 Major facilitator superfamily protein (.1) AT3G05400 312 / 7e-102 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002534 [exp] 865 / 0 AT1G75220 711 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Lus10041748 [exp] 590 / 0 AT1G75220 697 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Lus10028303 [exp] 585 / 0 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Lus10029629 [exp] 370 / 3e-124 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008183 [exp] 370 / 5e-124 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008182 [exp] 367 / 1e-122 AT2G48020 613 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027976 [exp] 364 / 3e-122 AT2G48020 598 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 368 / 1e-119 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 354 / 2e-118 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G259900 [exp] 684 / 0 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 652 / 0 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.002G212900 [exp] 385 / 1e-129 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 373 / 3e-125 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 346 / 1e-114 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 343 / 2e-113 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 334 / 6e-110 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G040000 [exp] 308 / 7e-100 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.005G037000 [exp] 299 / 2e-96 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027800 [exp] 291 / 2e-93 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10001656 pacid=23153297 polypeptide=Lus10001656 locus=Lus10001656.g ID=Lus10001656.BGIv1.0 annot-version=v1.0 ATGAGTTTCCGGGACGATTCTGAGGATGGAAGAGGCGGAGGAGGAGGAGGAGATTTGCGGAAGCCGTTCCTACACACGGGGAGCTGGTACCGTATGGGTT CAAGGCAATCCAGCAGCATGATGGGTTCCACTCAAGGGTTCCGCGACAGCTCCATCTCCATCCTTGCTTGCGTCCTCATCGTCGCTCTTGGCCCTATCCA ATTCGGATTCACTTGTGGGTATTCTTCCCCAACACAGACTTCAATCACCAAGGATCTTAACCTTACCGTCTCCGAGGCAAGAGACTCAACTCCGCTTCAA TTTTCTTTTGATTCCTATTCTTTAATGATTGCTGCCATTCCCAACATTATCGGTTGGCTTGCAATCTCGTTTGCCAAAGATTCTTCTTTCCTCTACATGG GAAGATTGCTGGAGGGTTTTGGTGTTGGAATTATCTCTTACACGGTGCCAGTTTATATAGCAGAAATAGCACCACAAAACCTGAGAGGTGGATTGGGGTC TGTTAATCAGCTTTCTGTTACAATTGGAATCTTGCTCGCTTACCTGCTCGGACTATTTGTTCCATGGAGGATTCTTGCTGTTTTAGGAATATTGCCGTGC ACAATTTTGATACCAGGCCTGTTCTTTATTCCTGAGTCTCCTAGATGGTTGGCTAAAATGGGCATGATGGAAGATTTTGAGTCTTCACTGCAAGTTCTTC GGGGTTTTGATGCTGATATTTCAGTGGAAGTAAACGAAGTTAAGAGAGCTGTAGCTTCGTCAAGTAAGAAAGCCACAATCCGCTTTGCTGACCTAAAACG GAGAAGATATTGGTTCCCGTTGATGGTTGGAATTGGGTTGCTTGTCCTTCAACAACTCAGCGGAATCAACGCTGTCCTGTTCTACTCCAGCAACATTTTT GAAGCTGCTGGAGTTACAAACAGCAATTTGGTCACATGTATTGTTGGTGCCCTTCAGGTCATTGCCACAGCTGTTACAACCTGGCTTGTAGATCGAACTG GGCGCCGGATATTGCTTATAGTCTCCTCTTCTGGAATGACTCTCAGCATCCTACTTGTTTCCGTCTCCTTTATTGTGAAGGACTTCGTATCAATTGACTC TGGTGCCCACAACATTTTGGGGATTCTGTCAGTGGCTGGAGTTTTGTTAATGGTTGTTACCTTCTCTTTGGGAATGGGAGCTATCCCCTGGGTCATTATG TCTGAGATTCTACCAGTGAACATAAAGGGGCTGGCTGGGAGCATAGCAACATTGGCGAATTGGTTCATCGTGTGGTTGGTCACCGTGACAGCTAACCTGC TCTTAACATGGAGTCCAGGAGGAACATTCCTCATTTACACTGCAGTGAGTGGCTTCGCAGTGGCGTTTGTAGCGTTGTGGGTTCCTGAAACCAAAGGAAG AACTCTGGAAGAAATTCAAGGGTCTTTCAGATGA
AA sequence Show only first row Show all	>Lus10001656 pacid=23153297 polypeptide=Lus10001656 locus=Lus10001656.g ID=Lus10001656.BGIv1.0 annot-version=v1.0 MSFRDDSEDGRGGGGGGDLRKPFLHTGSWYRMGSRQSSSMMGSTQGFRDSSISILACVLIVALGPIQFGFTCGYSSPTQTSITKDLNLTVSEARDSTPLQ FSFDSYSLMIAAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGGLGSVNQLSVTIGILLAYLLGLFVPWRILAVLGILPC TILIPGLFFIPESPRWLAKMGMMEDFESSLQVLRGFDADISVEVNEVKRAVASSSKKATIRFADLKRRRYWFPLMVGIGLLVLQQLSGINAVLFYSSNIF EAAGVTNSNLVTCIVGALQVIATAVTTWLVDRTGRRILLIVSSSGMTLSILLVSVSFIVKDFVSIDSGAHNILGILSVAGVLLMVVTFSLGMGAIPWVIM SEILPVNIKGLAGSIATLANWFIVWLVTVTANLLLTWSPGGTFLIYTAVSGFAVAFVALWVPETKGRTLEEIQGSFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10001656 [exp]	0	1
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10007994 [exp]	3.6	0.8421
AT3G26740		CCL	CCR-like (.1)		Lus10012569 [exp]	4.2	0.8343
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10012252 [exp]	4.9	0.8303
AT1G67623			F-box family protein (.1)		Lus10038709 [exp]	5.9	0.7766
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	7.2	0.8391
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10002534 [exp]	8.4	0.8291
AT2G33830			Dormancy/auxin associated fami...		Lus10025446 [exp]	8.5	0.8227
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Lus10028376 [exp]	10.2	0.7934
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10038819 [exp]	10.4	0.8184
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016025 [exp]	11.3	0.7999

Compare expression of checked genes

Lus10001656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.