Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19440 868 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 813 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT4G34510 716 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G26640 677 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G68530 669 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G25450 650 / 0 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT1G04220 638 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT4G34520 635 / 0 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT4G34250 610 / 0 KCS16 3-ketoacyl-CoA synthase 16 (.1) AT5G43760 607 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002533 [exp] 990 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 858 / 0 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10042318 [exp] 857 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10019446 [exp] 663 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10043300 [exp] 663 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10034319 [exp] 660 / 0 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Lus10041452 [exp] 659 / 0 AT1G25450 890 / 0.0 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) Lus10006637 [exp] 627 / 0 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10002691 [exp] 627 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G155600 [exp] 867 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.014G196200 [exp] 867 / 0 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.009G116700 [exp] 856 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.018G032200 [exp] 692 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 680 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G125300 [exp] 674 / 0 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.008G120300 [exp] 667 / 0 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.008G160000 [exp] 662 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079300 [exp] 638 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 635 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10001657 pacid=23153298 polypeptide=Lus10001657 locus=Lus10001657.g ID=Lus10001657.BGIv1.0 annot-version=v1.0 ATGGACTCCACCGCCGGCGAGATTCGAATCCAACAACCCCACCGCCTCCCCGACTTCCTCCAGAGCGTAAACCTCAAATACGTCAAGCTCGGCTACCACT ACCTCATCTCCAATCTACCTACCTTATTCTTCGTCCCTCTAATCGCCTTAACCTTAATCGAAGCCTCCCAGATGGATCCCGATGACCTCCGCCACCTCTG GCTCCACCTCCAATACAACCTCGTCGCCGTCATCACCTGCTCCGCCTTCCTCGTCTTCGGTCTCACCGTCTACATCGTCACTCGACCTGTCCCCATCTAC CTCCTCGACTACGCCTGCTACCGCCCTCCCAAAACCCTAATGGCTCCTTTTGTCCGCTTCATGGAGCATTCCCGTCTCACTGGCGACTTCGACGAGTCTT CCCTTGAGTTTCAGCGCAAGATCCTCGAGCGATCCGGACTCGGCGAGGAGACTTACGTCCCCGAGGCGATGCACTTCGTCCCACCGCGGCCGACGATGGC TGCCGCCAGGGAGGAGGCTGAACAGGTAATGTTCGGTGCCTTGGATACTCTATTCGCCAATTCCAATGTAAACCCTAAGGATATTGGGATTTTGGTAGTC AATTGTAGCCTGTTCAATCCCACGCCTTCCCTCTCGGCGATGATTGTTAATAAGTACAAGCTCCGTGGGAATATCCGGAGCTTTAATTTGGGTGGTATGG GGTGTAGCGCCGGTGTAATCGCCATCGATTTGGCAAAGGATCTTCTTCAAATCCACCGGAAAACTTACGCTGTCGTCGTGAGTACTGAGAACATTACTCA GAACTGGTACTTTGGGAACAAAAAATCGATGCTGATCCCTAATTGCTTGTTCAGAGTGGGTGGATCTGCGGTCCTGCTCTCGAATAAGTCAGGGGATCGG AGGAGAGCCAAGTACAAGCTCGTCCATGTCGTACGGACTCACCGAGGAGCAGATGACAAGGCTTTTTGTTGCGTTTACCAGGAGCAGGATCCCGATGGGA AGACTGGGGTTTCATTGTCAAAGGACTTGATGGCGATTGCAGGGGAAGCATTGAAGGCGAACATTACGACTCTGGGTCCTCTAGTCCTTCCTATTAGTGA GCAGCTTCTCTTCTTCTCGACATTGGTGGTGAAGAAGCTGTTCAACAACAAGGTGAAGCCGTACATCCCAGATTTCAAGCTCGCATTCGAACATTTCTGT ATCCATGCAGGCGGGAGGGCTGTTATCGATGAGCTGGAGAAGAATTTGCAGCTGTCTTCTGTTCATGTGGAAGCATCAAGGATGACTCTTCATAGGTTTG GGAACACCTCGTCGAGTTCAATATGGTACGAATTGGGTTACATTGAAGCGAAAGGGAGGATGAGGAAAGGGAATCGGGTGTGGCAGATTGCATTTGGGAG TGGGTTCAAGTGTAACAGCGCGGTGTGGGAGGCGCTGAGGAATGTGAATCCCTCGTCAAACGGACCTTGGGAAGATTGCATAGATAAGTACCCAGTTAAG ATAATGACTTGA
AA sequence Show only first row Show all	>Lus10001657 pacid=23153298 polypeptide=Lus10001657 locus=Lus10001657.g ID=Lus10001657.BGIv1.0 annot-version=v1.0 MDSTAGEIRIQQPHRLPDFLQSVNLKYVKLGYHYLISNLPTLFFVPLIALTLIEASQMDPDDLRHLWLHLQYNLVAVITCSAFLVFGLTVYIVTRPVPIY LLDYACYRPPKTLMAPFVRFMEHSRLTGDFDESSLEFQRKILERSGLGEETYVPEAMHFVPPRPTMAAAREEAEQVMFGALDTLFANSNVNPKDIGILVV NCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDLLQIHRKTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSGDR RRAKYKLVHVVRTHRGADDKAFCCVYQEQDPDGKTGVSLSKDLMAIAGEALKANITTLGPLVLPISEQLLFFSTLVVKKLFNNKVKPYIPDFKLAFEHFC IHAGGRAVIDELEKNLQLSSVHVEASRMTLHRFGNTSSSSIWYELGYIEAKGRMRKGNRVWQIAFGSGFKCNSAVWEALRNVNPSSNGPWEDCIDKYPVK IMT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10001657 [exp]	0	1
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011187 [exp]	1.4	0.8474
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10009859 [exp]	2.4	0.8585
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10021304 [exp]	3.2	0.8328
AT1G02020			nitroreductase family protein ...		Lus10030289 [exp]	3.7	0.8317
AT5G51740			Peptidase family M48 family pr...		Lus10038897 [exp]	5.3	0.8340
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10012323 [exp]	5.7	0.8211
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10009373 [exp]	10.5	0.8254
AT5G03370			acylphosphatase family (.1)		Lus10026533 [exp]	10.8	0.8295
AT3G12050			Aha1 domain-containing protein...		Lus10021072 [exp]	13.3	0.8468
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Lus10005621 [exp]	13.6	0.8300

Compare expression of checked genes

Lus10001657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.