Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48020 86 / 3e-21 ATPMEI1 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) AT3G17220 83 / 4e-20 ATPMEI2 pectin methylesterase inhibitor 2 (.1) AT4G02250 54 / 2e-09 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G50340 52 / 8e-09 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G31430 51 / 4e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G50325 50 / 6e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46960 50 / 6e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G09360 44 / 2e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46950 42 / 4e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G38610 41 / 0.0002 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017345 [exp] 301 / 4e-106 AT3G17220 89 / 1e-22 pectin methylesterase inhibitor 2 (.1) Lus10017347 [exp] 227 / 1e-76 AT3G17220 81 / 2e-19 pectin methylesterase inhibitor 2 (.1) Lus10017346 [exp] 181 / 1e-58 AT3G17220 79 / 8e-19 pectin methylesterase inhibitor 2 (.1) Lus10041650 [exp] 160 / 3e-50 AT1G48020 85 / 4e-21 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10001659 [exp] 157 / 4e-49 AT1G48020 51 / 3e-08 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10023114 [exp] 84 / 1e-20 AT3G17220 60 / 2e-11 pectin methylesterase inhibitor 2 (.1) Lus10008201 [exp] 62 / 2e-12 AT4G02250 113 / 3e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10019498 [exp] 61 / 1e-11 AT5G46970 87 / 1e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10001464 [exp] 58 / 9e-11 AT4G02250 112 / 1e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G044100 [exp] 63 / 1e-12 AT5G46940 111 / 3e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.004G016500 [exp] 57 / 2e-10 AT4G02250 73 / 2e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.006G134900 [exp] 55 / 1e-09 AT5G64620 76 / 2e-17 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.001G127500 [exp] 55 / 1e-09 AT4G02250 98 / 3e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G191500 [exp] 54 / 3e-09 AT2G31430 104 / 2e-28 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.010G209800 [exp] 51 / 3e-08 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.003G086600 [exp] 48 / 4e-07 AT5G38610 123 / 2e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G086500 [exp] 48 / 7e-07 AT5G46940 119 / 6e-34 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G066300 [exp] 47 / 1e-06 ND / Potri.008G013400 [exp] 39 / 0.0006 AT5G64620 66 / 8e-14 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10001658 pacid=23154053 polypeptide=Lus10001658 locus=Lus10001658.g ID=Lus10001658.BGIv1.0 annot-version=v1.0 ATGGCGACATCGTTCGTATGTCTCTCTGTCGCGGTGATCCTCCTCCTGTCCCAAACCCTCCCTTATGTGGCGGCTGACCTTCGCATAAGGTTGGCCCCAC CGGACATCGCCGCGATATGCGACAAGAGCATCGACCGCAACTTCTGCCTCAACTTCCTCAAGACGACGCCCGGGATCTCGACCGCCAATCTCAAGGGTGC CGGTCTCATCACCCTGGAGGCCGCACGTGGCGAAGCGGCCGACACAAAGAAGTACATCAAAAATTTGTTGGGAAAGGCGGCGGACCCCAAGACGAAGGAG AGCTACAAGTCGTGCCTGAGCAGTTACGACGATGCGGTGGACAACATCGAGACGGCCAAGGCGTCGTTGAACAGCGGCGACTACAACGGTGCTAACATCC AAGCCTCAGCGGCTCAGACTGATGCCGATGATTGCAAGGGTGTCAAGGGATCGGAGCTGCTGGGTAGGAACCGGCATTTGATTAAGGTTCTTGGGATCGT TTTGATCATTGCCAACAAGTTGGTCGGACGTTGA
AA sequence Show only first row Show all	>Lus10001658 pacid=23154053 polypeptide=Lus10001658 locus=Lus10001658.g ID=Lus10001658.BGIv1.0 annot-version=v1.0 MATSFVCLSVAVILLLSQTLPYVAADLRIRLAPPDIAAICDKSIDRNFCLNFLKTTPGISTANLKGAGLITLEAARGEAADTKKYIKNLLGKAADPKTKE SYKSCLSSYDDAVDNIETAKASLNSGDYNGANIQASAAQTDADDCKGVKGSELLGRNRHLIKVLGIVLIIANKLVGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	0	1
					Lus10003941 [exp]	1.0	1.0000
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	1.4	1.0000
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	1.7	1.0000
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	2.0	1.0000
					Lus10017294 [exp]	2.2	1.0000
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039560 [exp]	2.4	1.0000
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	2.6	1.0000
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10027892 [exp]	2.8	1.0000
					Lus10001546 [exp]	4.8	0.7816
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025913 [exp]	7.7	0.7274

Compare expression of checked genes

Lus10001658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.