Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48020 52 / 2e-08 ATPMEI1 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) AT3G17220 45 / 3e-06 ATPMEI2 pectin methylesterase inhibitor 2 (.1) AT5G46960 41 / 0.0001 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001658 [exp] 142 / 4e-43 AT1G48020 86 / 4e-21 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10017347 [exp] 140 / 2e-42 AT3G17220 81 / 2e-19 pectin methylesterase inhibitor 2 (.1) Lus10017345 [exp] 136 / 6e-41 AT3G17220 89 / 1e-22 pectin methylesterase inhibitor 2 (.1) Lus10017346 [exp] 105 / 1e-28 AT3G17220 79 / 8e-19 pectin methylesterase inhibitor 2 (.1) Lus10041650 [exp] 100 / 1e-26 AT1G48020 85 / 4e-21 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10023114 [exp] 53 / 8e-09 AT3G17220 60 / 2e-11 pectin methylesterase inhibitor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G044100 [exp] 48 / 5e-07 AT5G46940 111 / 3e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G086500 [exp] 40 / 0.0004 AT5G46940 119 / 6e-34 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10001659 pacid=23154056 polypeptide=Lus10001659 locus=Lus10001659.g ID=Lus10001659.BGIv1.0 annot-version=v1.0 ATGTCAATTTCAAAAGCGACCTCATTCTTGTTCCTCCTTATCACGGTTTTCTTCCTCCTATCCCAGACCCTTCCTCATGTCGCCGCGTTAGCCCCACCGG AGATCGTCGAGATATGTGCCAAGAGCATCGAAAAGACCCTCTGCAACGACTTCCTCAAGAATATGCCCGGCATGAAGACTGCCAACTTCAAGACCGCCGG TCTCATCACCCTGGACTCCGTGCGTGACCACGTCATCGAGACGGCGGTAAACATTGCCGACTTGCTTGGGGGTTTTTTCGTGGACCCCAAGACGAACGGG ACCTACAAGTCGTGCCTGATAAGCTACTATGATGCTGCAAAAGACATCGCGACGACCACAATATCGCTGAACATCGACGACTACAATGGCGCTAACATCC AGGCGTCGGCAGCTCAGGATAAGGTTAAGCATTGCTACGATGGCGTCAAGCAGGGAAGTACTCAGCCGGGAATTGAACTGAAAAGGGGTGTCACGTTCGA TATTAGTCTTATTGATCTCGTTTTGATCATCACCAACAAATTGCTCGGAAAATGA
AA sequence Show only first row Show all	>Lus10001659 pacid=23154056 polypeptide=Lus10001659 locus=Lus10001659.g ID=Lus10001659.BGIv1.0 annot-version=v1.0 MSISKATSFLFLLITVFFLLSQTLPHVAALAPPEIVEICAKSIEKTLCNDFLKNMPGMKTANFKTAGLITLDSVRDHVIETAVNIADLLGGFFVDPKTNG TYKSCLISYYDAAKDIATTTISLNIDDYNGANIQASAAQDKVKHCYDGVKQGSTQPGIELKRGVTFDISLIDLVLIITNKLLGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001659 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	6.6	0.9699
AT4G16050			Aminotransferase-like, plant m...		Lus10043051 [exp]	7.9	0.8585
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	9.4	0.9699
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	11.5	0.9699
AT3G50150			Plant protein of unknown funct...		Lus10005799 [exp]	13.3	0.9699
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009630 [exp]	14.8	0.9699
					Lus10011605 [exp]	16.2	0.9699
					Lus10024141 [exp]	17.5	0.9699
					Lus10025268 [exp]	18.8	0.9699
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10026232 [exp]	19.9	0.9699

Compare expression of checked genes

Lus10001659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.