Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32860 461 / 2e-162 Glycosyl hydrolase superfamily protein (.1) AT5G42100 426 / 2e-148 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT2G27500 402 / 7e-140 Glycosyl hydrolase superfamily protein (.1.2.3) AT4G18340 360 / 4e-123 Glycosyl hydrolase superfamily protein (.1) AT1G30080 360 / 6e-123 Glycosyl hydrolase superfamily protein (.1) AT3G15800 338 / 3e-114 Glycosyl hydrolase superfamily protein (.1) AT2G26600 337 / 5e-114 Glycosyl hydrolase superfamily protein (.1.2) AT2G05790 318 / 1e-105 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 314 / 4e-104 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 312 / 2e-103 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017344 [exp] 664 / 0 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10033244 [exp] 561 / 0 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1) Lus10008277 [exp] 555 / 0 AT1G32860 483 / 6e-170 Glycosyl hydrolase superfamily protein (.1) Lus10004869 [exp] 400 / 6e-139 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10020618 [exp] 400 / 3e-138 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10038501 [exp] 366 / 4e-126 AT4G18340 484 / 6e-172 Glycosyl hydrolase superfamily protein (.1) Lus10023309 [exp] 363 / 4e-124 AT4G18340 483 / 2e-170 Glycosyl hydrolase superfamily protein (.1) Lus10028122 [exp] 359 / 9e-123 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10042825 [exp] 346 / 3e-118 AT4G18340 479 / 1e-170 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G152400 [exp] 521 / 0 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.001G449100 [exp] 513 / 0 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.009G163700 [exp] 400 / 6e-139 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G202400 [exp] 394 / 1e-136 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G097400 [exp] 386 / 2e-133 AT2G27500 462 / 3e-163 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.011G084900 [exp] 376 / 2e-129 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G132700 [exp] 369 / 1e-126 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.003G032600 [exp] 353 / 1e-120 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 345 / 2e-116 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.006G067500 [exp] 330 / 7e-111 AT2G26600 561 / 0.0 Glycosyl hydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10001660 pacid=23154052 polypeptide=Lus10001660 locus=Lus10001660.g ID=Lus10001660.BGIv1.0 annot-version=v1.0 ATGGAGTTCTGCACTAACCAATTCCTCCCCCTCGTCATCCTCCTTGCTCTTTCAGCTTCAGTAGACGCCATGGGAATCAACTACGGCCAGATAGCGAACA ACCTCCCATCCCCACAAGACGCCGTCCCCTTAATCAAAGCACTCGGAGCTACAAAAGTCAAGCTGTACGACGCAAGCCCTCAAATCCTCAAAGCATTCTC CCACTCCAATATCGAATTCATCATTGGCCTCGGCAACGAGTACCTCTCCAAAATGGCGGCGGACCAAAACGCCGCCGTGTCCTGGGTCAAATCAAACGTC CAGACCTACCTCCCGGCCACCAACATCACCTGCATCGCCGTCGGCAACGAAGTCCTCACACTATCCGACGAATCCTTCATCCCCTTCCTCGTCCCAGCGC TTCAATCAATCCAATCCGCCGTCGTATCCTTAAATCTCCAAAATCAGGTCACCGTCACCACTCCTCACTCCCTCGCCGTCTTACAAAACTCTTACCCTCC TTCATCGGGAACCTTCCGGCGAGATCTGATCGGCTGCATCTCCAAAATCCTCGATTTCAACGCCAAGACGAATTCCCCTTTCTTAATCAACGCGTATCCT TACTTCGCCTACAAAGCGAATCCGAAGCAGGTCTCTCTGGATTTCGTCCTGTTTCAACCAAATCAAGGGATTATCGATCCTGTATCGAATCTCCATTACG ATAACATGCTGTTCGCACAGATCGACGCCGTCCATTACGCTCTAGCTTCGCTAGGGTATAAGGATATGCCGGTCCACATATCGGAGACTGGATGGCCGTC CAAAGGCGACGCCGACGAAGCCGGCGCCACCCCCGAGAACGCGAAGAAATATAACGGCAACTTAATCAAGACCATCTGTCAACGGAAAGGAACTCCGGCG AGGCCCAATATGGATTTGAACATCTACGTGTTCGCGTTGTTTAATGAGAACATGAAGACCGGCCCAACATCGGAGAGGAATTACGGCCTGTTTAAGCCCG ACGGGACTCCTGCTTACTCGATAGGGATTGACTTGCCGGCGGGAAACAGCAATCGGAGCAGCCCTGCTGCTTTAAATATTTAA
AA sequence Show only first row Show all	>Lus10001660 pacid=23154052 polypeptide=Lus10001660 locus=Lus10001660.g ID=Lus10001660.BGIv1.0 annot-version=v1.0 MEFCTNQFLPLVILLALSASVDAMGINYGQIANNLPSPQDAVPLIKALGATKVKLYDASPQILKAFSHSNIEFIIGLGNEYLSKMAADQNAAVSWVKSNV QTYLPATNITCIAVGNEVLTLSDESFIPFLVPALQSIQSAVVSLNLQNQVTVTTPHSLAVLQNSYPPSSGTFRRDLIGCISKILDFNAKTNSPFLINAYP YFAYKANPKQVSLDFVLFQPNQGIIDPVSNLHYDNMLFAQIDAVHYALASLGYKDMPVHISETGWPSKGDADEAGATPENAKKYNGNLIKTICQRKGTPA RPNMDLNIYVFALFNENMKTGPTSERNYGLFKPDGTPAYSIGIDLPAGNSNRSSPAALNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32860			Glycosyl hydrolase superfamily...		Lus10001660 [exp]	0	1
AT3G10290			Nucleotide-sugar transporter f...		Lus10018043 [exp]	2.0	0.8636
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10009133 [exp]	4.5	0.8564
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10026404 [exp]	5.5	0.8607
					Lus10042355 [exp]	5.5	0.8625
AT4G01200			Calcium-dependent lipid-bindin...		Lus10002155 [exp]	6.3	0.8478
AT3G57400			unknown protein		Lus10042066 [exp]	6.9	0.8397
AT4G39840			unknown protein		Lus10024058 [exp]	7.5	0.8385
AT5G40150			Peroxidase superfamily protein...		Lus10039471 [exp]	9.2	0.8489
AT3G57400			unknown protein		Lus10042067 [exp]	10.0	0.8212
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	10.0	0.8550

Compare expression of checked genes

Lus10001660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.