Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10570 1010 / 0 UBP9 ubiquitin-specific protease 9 (.1) AT1G32850 977 / 0 UBP11 ubiquitin-specific protease 11 (.1) AT4G10590 835 / 0 UBP10 ubiquitin-specific protease 10 (.1.2) AT2G40930 758 / 0 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT5G22030 633 / 0 UBP8 ubiquitin-specific protease 8 (.1.2) AT4G31670 94 / 1e-19 UBP18 ubiquitin-specific protease 18 (.1) AT2G24640 92 / 3e-19 UBP19 ubiquitin-specific protease 19 (.1.2) AT2G32780 94 / 4e-19 ATUBP1 ubiquitin-specific protease 1 (.1) AT5G10790 92 / 7e-19 UBP22 ubiquitin-specific protease 22 (.1) AT1G04860 91 / 3e-18 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017343 [exp] 1657 / 0 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10033243 [exp] 1312 / 0 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10008276 [exp] 898 / 0 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1) Lus10027289 [exp] 805 / 0 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10038994 [exp] 756 / 0 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10013369 [exp] 634 / 0 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008452 [exp] 619 / 0 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013599 [exp] 597 / 0 AT5G22030 811 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10021253 [exp] 595 / 0 AT5G22030 814 / 0.0 ubiquitin-specific protease 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G152500 [exp] 1211 / 0 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.001G449000 [exp] 1183 / 0 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.006G033800 [exp] 819 / 0 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.016G031900 [exp] 803 / 0 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.001G214800 [exp] 656 / 0 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G201100 [exp] 605 / 0 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.016G067400 [exp] 209 / 1e-59 AT4G10590 239 / 1e-70 ubiquitin-specific protease 10 (.1.2) Potri.018G017000 [exp] 103 / 2e-22 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.006G266100 [exp] 102 / 2e-22 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1) Potri.018G123200 [exp] 98 / 6e-21 AT5G10790 465 / 2e-158 ubiquitin-specific protease 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0125 [flax] [poplar] PF06337 [flax] [poplar] DUSP DUSP domain
Representative CDS sequence Show only first row Show all	>Lus10001661 pacid=23154058 polypeptide=Lus10001661 locus=Lus10001661.g ID=Lus10001661.BGIv1.0 annot-version=v1.0 ATGGACAATCAGGCCAACCAGGAGAAGGAGATCGTCAACCAATTGACTAGCCAAGCTGAGCTCGATTTGAAGCAAGGCGATCTCTACTTTGTCGTTTCCG CCGGGTGGTTCTCGAAATGGGAGAGGTATGTTGGTCAAAGTGCCAATGAGTACTTATCGGACTGGCAGTCCTCCGGTGACTCTACTTCTTCCACGTCTGC TGATAGACCTGGTCCAATTGATAACTCGGATTTAGTTGACAATCCAAGTCATTCTGGTGGTGACGATCTGGACATCGTTAGAACCTTGCTTGAAGGCAAA GATTATGTTCTGGTTCCTCAGCTAGTTTGGGAGAAGCTTGTGCAGTGGTACAAAGGAGGTCCAGCATTGCCGAGGAAAGTGATTCCACAGGGTGTTTCTA GTAAAAGGCAGCTCAATGTTGAGGTTTATCCACTTCGCTTGCTGTTGATTGATTCCAGAGACAAGAGCATATCCACAATTCGGTTAAGCAAAAAGGCTTC TTCCAGTGAGCTATATGAGAGGGTCTGTGCACTTAAGGGAGTGGAGAGAGAAAAGTGCGTGCTTTGGGACTACTTCAATAACCAAAGACATTCAAAGCTT GTCTATTCCAAACAAACCCTTGAGGAACTGAATTTGCAGATGGACCAAGAGGTTGAAAATGTTAGATGGTTTCTCGTGGCATTGTTCGTGTCTTGTCTTG TCTATCTGATGGGATGTCTTAGTTTTGTCCAAGCAGATAAAATTTCCAATCTTCTTTGCCAATGCATTCTCCTCCTTTGGCAGATACTTCTCGAGCTACA ATTAGATCGATTGTATTCTTCTCAATCTGGAAATGATGCAAGTCGGAACGAATTAGCCATGGTGCCACTGGAGCCATGCAGGACCCGGCAATCAATTGCT GGAGGCTCAAGTGTGTCTAATGGTCACCCAAACTCTTATAGCATCAACACACAACCAGGAAATGTAAACTCCATCTTTAATGATGTAGGCGAGGGTCTTG GTACTAAAAAAACTATCAAAACAGAGGAGAAGGGAGGTTTGGCAGGACTGCAGAACTTGGGAAATACTTGCTTTATGAACAGTGCTTTACAGTGCTTAAT TCACACTCCCCCGCTTGTTGATTACTTCCTCCAAGATTACACTGCAGAAATCAACAAAGAAAATCCGCTTGGAATGCATGGTGAGCTTGCACTTGCATTT GGCGAGTTGCTGAGGAAATTGTGGTCATCTGGGAGGAATGCAGTTGCTCCACGTGCATTTAAAGGGAAACTATCACTTTTTGCTCCACAGTTTAGTGGCT ATAATCAGCATGATTCCCAAGAGCTTCTTGCCTTTTTATTGGATGGCTTACATGAAGATTTGAATCGTGTGAAACGGAAGCCTTACATTGAGATGAAGGA TAGGAGTGGTCATCCGGATGAGGAAGTTGCAGATGAGAGTTGGCAATATCACAAGGCTCGGAATGATTCTGTTATTGTAGATGTTTGCCAGGGTCAATAC AAGTCAACATTGGTTTGTCCAGTTTGCAGCAAAATTTCTGTTACTTTTGATCCACTCATGTACTTGTCATTACCACTACCTTCAACGGTCACTCGGTCTA TGACGGTGACAGTATTTTATGGGGATGGAAGTGGTCTCCCAATGCCATACACGGTGTCGGTGATGGAAAATGGACAGTGTAGGGATCTTACCCAAGCACT AGGAGCTGCATGCTGTTTGAAAGCTGATGAAAGCCTCCTGTTGGCAGAAGTCTATGAACACAAGATTTATCGTTACTTTGAGAATCCTTCTCAGCTGTTG ACTTCTATAAAGGATAAAGACCATCTCGTGGCTTACCGTTTGTCCGAAAAGGGTGCAAGAAAAAAGAAACTAGAGATTATTCATCGGGAAGGGTCGTCAG CTGATTCTCTGAAGGGTGGTGTTGGAAAGTATTTCGGAACACCTCTTGTTACGTATTTGGACAGAGACCAACAAACTGGAGCTGATATCGATGCTGTTGT ATCAAGATTGCTCTTACCCTTTAGGAGAGTGACTCCTTCTGCAATAGGTTACAGTGGCGAGGAAAATGGTGATCTCATGGCTGCTACTGATGCAATCTCA ACTGATTACTCAGTTGAGTGTGAACCTATGGATGAGTCGGTGGATGGAACGAGCCAACAACTTGTAAACCAGCTCTTCTCAGTTGAAGACTACGGCTCAT CCAGCAAGCGTGTCCATAAGGACTCTGTCTTAAAAACTAGCAACCATACAAAGATCTTCATGGACTGGACGGAAGAAGAACATAAGCTGTACGATTCTAG TTACCTGAAAGACCTTCCAGATGTGTTTCATAAAACTGGGTTTAGCACAAAGAAATCCAAGCAGGATGCCATCTCGTTGTTTTCGTGCTTGGAGGCGTTT CTAAGGGAAGAACCTCTTGGGCCTGATGACATGTGGTATTGTCCAAACTGTAAAGAACATCGCCAAGCCACCAAGAAACTGGACTTATGGAAGTTACCCG AGATTCTCGTCGTACACATGAAGCGGTTCTCGTACAGTAGATTCTTGAAGAACAAACTGGACACGTTTGTGGATTTCCCGATTCATCGTCTTGACTTGAG CAAGTACGTGAAAAAGAAAGATGGCGACTCTTGTATGTATGAACTTTATGCGATCAGCAACCATTATGGCGGTCTAGGTGGTGGACACTACACAGCGTAT GCAAAGCTAACGGATGAAGATAGGTGGTATAATTTCGACGACAGCAGGGTCACACCAGTCGACGAGGCGGAGATCAAGACTTCGGCTGCATACGTGCTAT TGTACAGAAGAGTGAAAGCTCAAACACAGTAA
AA sequence Show only first row Show all	>Lus10001661 pacid=23154058 polypeptide=Lus10001661 locus=Lus10001661.g ID=Lus10001661.BGIv1.0 annot-version=v1.0 MDNQANQEKEIVNQLTSQAELDLKQGDLYFVVSAGWFSKWERYVGQSANEYLSDWQSSGDSTSSTSADRPGPIDNSDLVDNPSHSGGDDLDIVRTLLEGK DYVLVPQLVWEKLVQWYKGGPALPRKVIPQGVSSKRQLNVEVYPLRLLLIDSRDKSISTIRLSKKASSSELYERVCALKGVEREKCVLWDYFNNQRHSKL VYSKQTLEELNLQMDQEVENVRWFLVALFVSCLVYLMGCLSFVQADKISNLLCQCILLLWQILLELQLDRLYSSQSGNDASRNELAMVPLEPCRTRQSIA GGSSVSNGHPNSYSINTQPGNVNSIFNDVGEGLGTKKTIKTEEKGGLAGLQNLGNTCFMNSALQCLIHTPPLVDYFLQDYTAEINKENPLGMHGELALAF GELLRKLWSSGRNAVAPRAFKGKLSLFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKRKPYIEMKDRSGHPDEEVADESWQYHKARNDSVIVDVCQGQY KSTLVCPVCSKISVTFDPLMYLSLPLPSTVTRSMTVTVFYGDGSGLPMPYTVSVMENGQCRDLTQALGAACCLKADESLLLAEVYEHKIYRYFENPSQLL TSIKDKDHLVAYRLSEKGARKKKLEIIHREGSSADSLKGGVGKYFGTPLVTYLDRDQQTGADIDAVVSRLLLPFRRVTPSAIGYSGEENGDLMAATDAIS TDYSVECEPMDESVDGTSQQLVNQLFSVEDYGSSSKRVHKDSVLKTSNHTKIFMDWTEEEHKLYDSSYLKDLPDVFHKTGFSTKKSKQDAISLFSCLEAF LREEPLGPDDMWYCPNCKEHRQATKKLDLWKLPEILVVHMKRFSYSRFLKNKLDTFVDFPIHRLDLSKYVKKKDGDSCMYELYAISNHYGGLGGGHYTAY AKLTDEDRWYNFDDSRVTPVDEAEIKTSAAYVLLYRRVKAQTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10001661 [exp]	0	1
AT5G19390			Rho GTPase activation protein ...		Lus10036047 [exp]	1.0	0.9142
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10033368 [exp]	3.2	0.8576
AT4G24550			Clathrin adaptor complexes med...		Lus10024548 [exp]	4.5	0.8153
AT3G06440			Galactosyltransferase family p...		Lus10032650 [exp]	5.5	0.8412
AT2G39805			Integral membrane Yip1 family ...		Lus10030159 [exp]	7.7	0.7831
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10017481 [exp]	7.9	0.8116
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Lus10017120 [exp]	9.5	0.7878
AT1G71820		SEC6	SEC6 (.1.2)		Lus10026982 [exp]	11.0	0.8036
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10004434 [exp]	11.2	0.7951
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006252 [exp]	12.2	0.7948

Compare expression of checked genes

Lus10001661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.