Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32810 253 / 1e-69 RING/FYVE/PHD zinc finger superfamily protein (.2) AT4G10600 170 / 2e-47 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017342 [exp] 1738 / 0 AT1G32810 320 / 2e-92 RING/FYVE/PHD zinc finger superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G152600 [exp] 681 / 0 AT1G32810 238 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.2) Potri.001G448900 [exp] 660 / 0 AT4G10600 195 / 3e-56 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001662 pacid=23154054 polypeptide=Lus10001662 locus=Lus10001662.g ID=Lus10001662.BGIv1.0 annot-version=v1.0 ATGGTTAATTGCGATGAGTGTGGTGTTTGGGTGCACACTCGTTGCTCTCGGTATGTGAAGGGAGATGACTTGTTTGCTTGTGATAAGTGCAAGGCGAAGA ACAATCGTTACAGAGACAATGCAGAGAGCGAGGTTGCTCAGTTGTTGGTTGAGCTGCCCACAAAAACAATCCGGCTGGAGAATAGTTGTGCAAACGGCCC ACCGCCTCGCCGTCCAGTTAGGCTGTGGACTGATATGCCATTAGAGGAGAAGGTGCATGTGCAGGGCATTCCTGGTGGTGACTCGGCTTTGTTCCGTGGC CTATCGTCCGTTTTCACACCAGAGTTATGGAAGTGCACAGGGTATGTCCCGAAGAAGTTCAATTTCCAGTACAGGGAGTTCCCATGTTGGGACAAGGATT CTGATGTTAATAATGAGGATGAGAATGAGAATAATGTTGATAAGGGGGCTGGTGTTCTCTTCTCTTTGTCAAAGGAAAGCATGTTTGTTGCTCCTAGAGA AGAGAAAATTGATCGTCAGAAAAGTGTGCTCCTCAAAGAGACCAAGAAGCGTGATCTTCGATCTGGTGAAGTCGGGGGTTCCCATGTTGGACTTAAGAAA AAGAGAAGTTTGCTTCAGCCAGTCCTAGTTCATTCAGGCAAGAGGAAGAAAGAAGATCCGTTGATGTTCAAAGATCAAAGTGGAAAGAAGAAAGCTAGGG TTTCAGACAAGGAGGTAGACTCAAGGAAGCGAGGTCATCAAACTTCAAGGACAGCATTTCCATCCACCAGCAGTGATGCAAAAACCTCTAAATTGCATGA AGGCAGAGATCCACCGCGTCGTAAGGATGTTGGTCTGGACACTAATAACTCGTATAAAAAAGAACAAGGATCTCAGCAATTTGAATCGGATAATCATGTT GCACGGTGCAATATTGTCGAGGATTCCAAGAGTGACACTCTGGTGATTGATCACTCCATGGACACTCCTAGCACCGTGAAAGATAATTTGGCAATGGGAG CAATTCTCAAGGAAAGAAGGACTAGTCATGGAATTTCATCATCTCCGACTAGTTCGCTAAAAATTGATGATGTGTTGCCCATGGAACATGGTGAAGTTGG GAGAAACCAAGAGCCTATTAAACAAGAGGAAGATAACGAGATGAACAGTTCCCATGCTGGAACTGAGAAGAAGGATCTAGTCGAAAAGGTTGATAGTGCT AAAGTAGAGATTAATGATAGCTACATCCGCACTACCATTGTCTTGGGAGTTCCTGCTGATAGTCGTTTTTGGGTGATGAAATCCCCTCCGGCTTCTGGCG GGACAAAAGATGCAGTGAGATCTTCAGACAATGACTCTGAAAACATTAAGATCAACGATGTGGTATCAGCTGTATCTCCGCGGGATAAGAATGTTGAAGA AGTTGAGAGAACTTTAGATGGACAAGCAGTCAGCAAATGTGACAAGGAAAAGGCTGTTGAGAGTAAATGTCGCGCAGAAGAAGTCAGCCAGCTATCTGGT GATCATTCTAAGATTACGAGAGGAGAATCTGGGGGTTCAGACGATGCAGTCCCTGTAAAGAAGTGTAATTCAGAAGTTAATCAAGATTTTGACTCAGCTG AAGGGCAGCTCAAATCCAGCAAAATTATTTTAAGCTCCCCTGCATTATCTAGTCAGCAAAAAATAGCTGCGACTGTAGGGAAGTCATTATCCAATTCATC CACTAACACTGTCCTAAAGTCAGCTGCTCCAGATCACTTTACGTCCACTGACGAGAAGAAAGCTATAGTGGATGCTAAGAACCCTGTCACTTCCGATACC CTGGACAAAAAGGACCACGCTGCAAATGACATTGTCAATGACAGGGATGTTGACAGGCGTAGCCCATCCAGGGGCAGGTCAAGAGATCATCCAAGGAGTT CTCTAAACTCTAGTTCAAAGTTATCCAGCACAAGCAAGAGTTTGCATACCTCCACCTCTAGGAGAGCAGCGTCCAATTCAAAAGATTTCACCAATCAGTC GTCTTCTAAAGTATCTTTGACACAGAATCCTTGTGCGGCTGCTGGTTCACTGCAAAGTGAGCGCTGCTCAAACTCCCAAAATAGAACACCAGGTTCAGGC TTACCGAGGGGTGAGAAATTTAATCATTCAATTAGTCAGTCTGCATCTAAACTGACCCATTCACCGTCCAGTAATCTTGCTCCTCCGACCAGTTCTATTT CGACACTCAGTGATGAAGAGCTGGCTTTGCTTTTACATCAAGAACTCAATAGTTCTCCTAGAGTGCCTCGTGTTCCTCGTGTTCGGCAAGGTACACAGTT AACCTCTCCAACTGCAGCTAGCTTACTTATGAAGCGCAGCACATCGGGCTCCGGAGCAAAAGATTTTAGCTCGTTTTCTAGGAGAAAAACTAAAGATATG TCCAAAGATGATCATTCCCGTGCCCATCGGCTAGATGATGAACCTAGAAGGGCAGAAAGACGCCATTCTTCTCCTGATCGGAGGAGACAAGATCCTGAGT CAAAGAGAGACGAGGGTGGATCTTCTACGCGAGCTCAGAGAGTGAAGAAGAACACAGCTCCAGTCTCCAATTCAACTGCCAACAGTGGTCGTTCTTCCTC TACTGACGGTAATGATCACCATGTATCGTCACTAAGAAAGTCTCCTCAGAGCATCTCTGATGAGGAAACTGGACCTGCTAATGGTTCTGTTCGTCGCACT TTACCAGGCCTAATCAATGAGATCATGAGCAAAGGCAAGCGCATGACATATGAGGAACTCTGTAATGCGGTTTTACCGCATTGGCCCAGCTTGAGGAAGC ATAACGGTGAACGCTATGCATATTCCAGTCATTCCCAGGCTGTTCTAGATTGCCTTAGGAATAGACATGAATGGGCTCGGTTGGTCGATCGGGGTCCCAA GACGAGTTCCAGCAGGAAAAGACGGAAGACCGATGCTGAAGAATCAGAAGACAATGAGGTCGGGAAAGGGAGAAGTAGACGGGAGAGAGAAGGGAAGAGC GTTGTAGAGGCAGATAGAGACGAGTTCACGAAAGGGAAGCGGAATGGTAGGAAAAGGAGGCGTCTGGCCTTGCAAGGTAGAGGAATAAAAGATGCGCGGA AGCCACCAAAGGGAGATCATCAGCTGACAGACACCGATAGCGCCTTCTCGGATTCAAGTAACGAGAGCTCGTTCAGCGACGAGGACGAGATGCAAGGCAG CGCAGGGGGTGGTCCTTTTAGAAGTGACGAGTCCGATAGCTCCGACGAGACCGGAACATCGTAG
AA sequence Show only first row Show all	>Lus10001662 pacid=23154054 polypeptide=Lus10001662 locus=Lus10001662.g ID=Lus10001662.BGIv1.0 annot-version=v1.0 MVNCDECGVWVHTRCSRYVKGDDLFACDKCKAKNNRYRDNAESEVAQLLVELPTKTIRLENSCANGPPPRRPVRLWTDMPLEEKVHVQGIPGGDSALFRG LSSVFTPELWKCTGYVPKKFNFQYREFPCWDKDSDVNNEDENENNVDKGAGVLFSLSKESMFVAPREEKIDRQKSVLLKETKKRDLRSGEVGGSHVGLKK KRSLLQPVLVHSGKRKKEDPLMFKDQSGKKKARVSDKEVDSRKRGHQTSRTAFPSTSSDAKTSKLHEGRDPPRRKDVGLDTNNSYKKEQGSQQFESDNHV ARCNIVEDSKSDTLVIDHSMDTPSTVKDNLAMGAILKERRTSHGISSSPTSSLKIDDVLPMEHGEVGRNQEPIKQEEDNEMNSSHAGTEKKDLVEKVDSA KVEINDSYIRTTIVLGVPADSRFWVMKSPPASGGTKDAVRSSDNDSENIKINDVVSAVSPRDKNVEEVERTLDGQAVSKCDKEKAVESKCRAEEVSQLSG DHSKITRGESGGSDDAVPVKKCNSEVNQDFDSAEGQLKSSKIILSSPALSSQQKIAATVGKSLSNSSTNTVLKSAAPDHFTSTDEKKAIVDAKNPVTSDT LDKKDHAANDIVNDRDVDRRSPSRGRSRDHPRSSLNSSSKLSSTSKSLHTSTSRRAASNSKDFTNQSSSKVSLTQNPCAAAGSLQSERCSNSQNRTPGSG LPRGEKFNHSISQSASKLTHSPSSNLAPPTSSISTLSDEELALLLHQELNSSPRVPRVPRVRQGTQLTSPTAASLLMKRSTSGSGAKDFSSFSRRKTKDM SKDDHSRAHRLDDEPRRAERRHSSPDRRRQDPESKRDEGGSSTRAQRVKKNTAPVSNSTANSGRSSSTDGNDHHVSSLRKSPQSISDEETGPANGSVRRT LPGLINEIMSKGKRMTYEELCNAVLPHWPSLRKHNGERYAYSSHSQAVLDCLRNRHEWARLVDRGPKTSSSRKRRKTDAEESEDNEVGKGRSRREREGKS VVEADRDEFTKGKRNGRKRRRLALQGRGIKDARKPPKGDHQLTDTDSAFSDSSNESSFSDEDEMQGSAGGGPFRSDESDSSDETGTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10001662 [exp]	0	1
AT3G27260		GTE8	global transcription factor gr...		Lus10014609 [exp]	4.2	0.8723
AT5G44090			Calcium-binding EF-hand family...		Lus10022907 [exp]	4.5	0.8699
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10006490 [exp]	5.0	0.8846
AT2G20210			RNI-like superfamily protein (...		Lus10011909 [exp]	5.1	0.8826
AT4G08540			DNA-directed RNA polymerase II...		Lus10020601 [exp]	6.3	0.8709
AT1G79020			Enhancer of polycomb-like tran...		Lus10034778 [exp]	6.5	0.8713
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10015257 [exp]	6.7	0.8723
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10042101 [exp]	7.9	0.8782
AT5G05130			DNA/RNA helicase protein (.1)		Lus10039001 [exp]	8.2	0.8215
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10024026 [exp]	8.8	0.8620

Compare expression of checked genes

Lus10001662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.