Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64700 125 / 2e-35 unknown protein AT3G61920 80 / 2e-18 unknown protein AT5G37840 42 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008274 [exp] 162 / 3e-49 AT1G64700 118 / 9e-33 unknown protein Lus10017341 [exp] 155 / 3e-48 AT1G64700 56 / 2e-10 unknown protein Lus10002686 [exp] 42 / 4e-05 AT3G61920 57 / 2e-11 unknown protein Lus10030204 [exp] 43 / 6e-05 AT3G61920 59 / 4e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G153000 [exp] 160 / 3e-49 AT1G64700 160 / 1e-49 unknown protein Potri.001G448500 [exp] 148 / 4e-44 AT1G64700 154 / 3e-47 unknown protein Potri.002G178900 [exp] 114 / 2e-31 AT3G61920 142 / 6e-43 unknown protein Potri.014G104900 [exp] 107 / 2e-28 AT3G61920 130 / 4e-38 unknown protein Potri.001G089000 [exp] 57 / 1e-09 AT3G61920 81 / 5e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001663 pacid=23154042 polypeptide=Lus10001663 locus=Lus10001663.g ID=Lus10001663.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCTTCGTCGGCGGCGGTGGAGGCGGAGGCAGAGGAGGAGCAATCAGAGTGATAACAGCCACGGGAGCCGTCATGGAATTCAATTTCCCGA TAACCGCCGGCTGCATCACCGCCGAGTTTCCCGGACACGCGCTCTTCCCTTCACACGATCTCTTCTGGACCCCACTCTCCCTCCACCATCTCCTCCGCCC CGGCCACTCCTACTACCTCCTCCCCCTCACCACTCCCACCGCCGCCCCCAATTTTCCAATCGCTTCTCTCAAGAATTCATCCTCACCATCCATTTCTGCT TCCGTCCGGGAAGGCCACGTCAGATCCAAGAGCTCTCCTTCCTCGCTTAATTCGGCCGCGCCCACGCCTTACAGGATGTCGCTGAGCAGATCCTACACCA CCGACGGCTTTTCCATTATGTCTAATTCCTCTTCCGCCACCGCGATTTCCGGAATTGGGAACGGTAATTATCAGAAGGAGTCTGCAGGGTCTTTCTGGAA AGTGAAGCTGGTGATTAGTCCGGATCAGCTTCTTCAGATTCTGTCTCAAGAAGGGTCGACTGGCGATTTGATCCACAACGTCACGGCGGTGGCCAAGTGC GGCGGCGGATATTCGTCGTCATCGGTACTTCCGTCTTCTTCTTCGTCCTCGTCGTCGTCGGCGGCGGCTTCTTCCGTCGGTGAGCTGTCGGATGAGTGGA TTAAATCAACTAATGCTATTAGGTCTACCGCCTAG
AA sequence Show only first row Show all	>Lus10001663 pacid=23154042 polypeptide=Lus10001663 locus=Lus10001663.g ID=Lus10001663.BGIv1.0 annot-version=v1.0 MGNCFVGGGGGGGRGGAIRVITATGAVMEFNFPITAGCITAEFPGHALFPSHDLFWTPLSLHHLLRPGHSYYLLPLTTPTAAPNFPIASLKNSSSPSISA SVREGHVRSKSSPSSLNSAAPTPYRMSLSRSYTTDGFSIMSNSSSATAISGIGNGNYQKESAGSFWKVKLVISPDQLLQILSQEGSTGDLIHNVTAVAKC GGGYSSSSVLPSSSSSSSSSAAASSVGELSDEWIKSTNAIRSTA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64700			unknown protein		Lus10001663 [exp]	0	1
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10022493 [exp]	1.4	0.8646
AT2G28790			Pathogenesis-related thaumatin...		Lus10016572 [exp]	1.7	0.8486
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10033886 [exp]	2.4	0.8693
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027986 [exp]	6.3	0.8380
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10027847 [exp]	6.7	0.8357
AT1G67340			HCP-like superfamily protein w...		Lus10011362 [exp]	7.5	0.8055
AT2G46150			Late embryogenesis abundant (L...		Lus10017531 [exp]	7.7	0.8270
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Lus10000026 [exp]	8.6	0.7913
					Lus10029150 [exp]	9.8	0.8182
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	10.6	0.7747

Compare expression of checked genes

Lus10001663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.