Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02800 592 / 0 ATCEL2 cellulase 2 (.1) AT4G02290 587 / 0 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G71380 536 / 0 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT1G23210 532 / 0 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT1G22880 531 / 0 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT1G70710 529 / 0 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT4G39010 526 / 0 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G39000 474 / 2e-164 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT4G09740 449 / 1e-154 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT4G23560 447 / 9e-154 ATGH9B15 glycosyl hydrolase 9B15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008208 [exp] 588 / 0 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 578 / 0 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10029071 [exp] 535 / 0 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10018077 [exp] 535 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10042071 [exp] 529 / 0 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10025880 [exp] 522 / 0 AT1G71380 646 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10002930 [exp] 513 / 2e-179 AT1G71380 706 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10017338 [exp] 496 / 7e-172 AT1G02800 390 / 1e-130 cellulase 2 (.1) Lus10027201 [exp] 473 / 4e-163 AT1G23210 560 / 0.0 glycosyl hydrolase 9B6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G083200 [exp] 775 / 0 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.002G202400 [exp] 604 / 0 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 589 / 0 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.019G069300 [exp] 553 / 0 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.003G147600 [exp] 545 / 0 AT1G02800 432 / 3e-150 cellulase 2 (.1) Potri.004G162200 [exp] 537 / 0 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.010G109200 [exp] 531 / 0 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.008G132700 [exp] 531 / 0 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.009G123900 [exp] 526 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.015G128000 [exp] 491 / 8e-171 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10001666 pacid=23154050 polypeptide=Lus10001666 locus=Lus10001666.g ID=Lus10001666.BGIv1.0 annot-version=v1.0 ATGTATTCCAAGTCCAAATATATCTCATTCTTACTAACCGTTGGTTCACTGATCTTGTTTGTGTCTCACGCATTCACCAGTGACGATTACTCCGACGCCC TTGAAAAATCCATTCTGTTTTTCGATGGCCAGAGGTCGGGAAATCTGCCCTCCGACCAGCGGCTTACGTGGAGGGGAGACTCTGGACTGTCTGACGGGTC CACTTACCACGTTGACCTCGTGGGAGGATACTATGATGCAGGCGACAATGTCAAATTCGGACTCCCAATGGCATTCACCACCACATTGCTTTCCTGGAGT GTGATCGAGTTCGGTAGCTCAATGGGGGACCGGAATATCGAGAATGCCAAGTCTGCGATTCGTTGGAGCACTGACTACCTTCTCAAGGCCGCCACTGCAA CACCTGACACCCTTTATGTTCAGGTTGGAGAGCCGAACATGGACCACAGATGCTGGGAGAGGCCGGAGGACATGGACACTCCACGAACTGTCTACGGAGT CACACCTCGAAACCCGGGCTCGGATGTAGCTGCCGAGACGGCTGCTGCTCTTGCAGCAGCGTCACTTGTGTTTAAGGATTCCGACCCTCTTTACTCCTCC AAACTGCTTGGAACAGCCGTCAAAGTATTTAGCTTTGCAGATATGTACAGAGGATCTTACAGTGACTCTCTTGGTTCAGTCGTCTGCCCATTTTACTGCT CTTACTCAGGATATCATGATGAGCTTTTATGGGGAGCATCATGGCTCCATAAAGCATCACAAAATGTGACCTACTTGAGCTATATACAATCAAACGGGCA CACTCTAGGAGCCGAGGATGACGATTTTTCCTTCAGTTGGGACGACAAGCGCCCCGGAACCAAAGTCCTCCTATCTAAGGGATACTTGGAAAACACGTCA CCAGAATTCGAGTTATACAAATCTCACTCAGACAGCTACATATGCTCACTAATCCCAGGAACTTCAACATCCCAAGCACAATACACTCCCGCCGGACTTC TATACAAAGGAGCCGAGAGCAATCTACAGTACGTAACATCAACAACATTCTTGCTACTTACATACGCCAAGTACCTGAACTCAACCGGAGGCGGCGGCGA GACAATCTGCGGCGGCGGGACAAAGGTCACGGCGGAGTCTCTGGTAGCGCAGGCGAAGAAACAAGTGGATTACATCTTGGGGGAAAATCCGGCCAAGATG TCTTACATGGTTGGGTTTGGGGAGAAGTATCCGTTGCACGTTCACCACAGAGGCTCCTCTGTTCCGTCGTTGAAATCGCACCCTTCGAGGATTCAATGTG GCGATGGGTTTCAGTATTTGTATTCCGGGTCGCCGGATCCGAACTTGCTTGTCGGGGCGATAGTCGGAGGTCCGGATCGGAGAGACGGGTTTGAGGATTC GAGGGGGAATTACCAGCAATCGGAGCCTGCTACTTACATTAATGCTCCGTTCGTCGGGGTGCTCGCTTTCTTTGCCGCTACAACTTGA
AA sequence Show only first row Show all	>Lus10001666 pacid=23154050 polypeptide=Lus10001666 locus=Lus10001666.g ID=Lus10001666.BGIv1.0 annot-version=v1.0 MYSKSKYISFLLTVGSLILFVSHAFTSDDYSDALEKSILFFDGQRSGNLPSDQRLTWRGDSGLSDGSTYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWS VIEFGSSMGDRNIENAKSAIRWSTDYLLKAATATPDTLYVQVGEPNMDHRCWERPEDMDTPRTVYGVTPRNPGSDVAAETAAALAAASLVFKDSDPLYSS KLLGTAVKVFSFADMYRGSYSDSLGSVVCPFYCSYSGYHDELLWGASWLHKASQNVTYLSYIQSNGHTLGAEDDDFSFSWDDKRPGTKVLLSKGYLENTS PEFELYKSHSDSYICSLIPGTSTSQAQYTPAGLLYKGAESNLQYVTSTTFLLLTYAKYLNSTGGGGETICGGGTKVTAESLVAQAKKQVDYILGENPAKM SYMVGFGEKYPLHVHHRGSSVPSLKSHPSRIQCGDGFQYLYSGSPDPNLLVGAIVGGPDRRDGFEDSRGNYQQSEPATYINAPFVGVLAFFAATT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10001666 [exp]	0	1
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10011105 [exp]	8.1	0.6999
AT1G27461			unknown protein		Lus10018671 [exp]	9.0	0.7119
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10007568 [exp]	19.4	0.6451
AT1G50920			Nucleolar GTP-binding protein ...		Lus10007959 [exp]	31.2	0.5955
AT3G22250			UDP-Glycosyltransferase superf...		Lus10031068 [exp]	49.0	0.6135
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10014713 [exp]	102.3	0.5207
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	155.9	0.5365
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10041311 [exp]	162.7	0.5395
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10015222 [exp]	163.7	0.4975
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10031139 [exp]	185.5	0.4988

Compare expression of checked genes

Lus10001666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.