Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64680 307 / 9e-107 unknown protein AT1G03055 151 / 3e-45 unknown protein AT4G01995 113 / 1e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017338 [exp] 356 / 1e-121 AT1G02800 390 / 1e-130 cellulase 2 (.1) Lus10018752 [exp] 150 / 1e-44 AT1G03055 230 / 5e-75 unknown protein Lus10024837 [exp] 150 / 4e-44 AT1G03055 229 / 1e-73 unknown protein Lus10012004 [exp] 112 / 6e-30 AT4G01995 283 / 9e-96 unknown protein Lus10016264 [exp] 92 / 4e-22 AT4G01995 215 / 3e-69 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G083300 [exp] 308 / 3e-107 AT1G64680 383 / 8e-136 unknown protein Potri.005G216400 [exp] 151 / 5e-45 AT1G03055 235 / 8e-77 unknown protein Potri.002G046500 [exp] 147 / 9e-44 AT1G03055 258 / 3e-86 unknown protein Potri.002G194500 [exp] 119 / 4e-33 AT4G01995 285 / 3e-97 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001667 pacid=23154057 polypeptide=Lus10001667 locus=Lus10001667.g ID=Lus10001667.BGIv1.0 annot-version=v1.0 ATGACTCTGTTCGCCCGCAAGATGGAGAATTTCGCATCCCCTTCCGCCGTGAAAGCATCGAGAAACGGCACCGTTTCATCAAAGGGGTGGCTGGATTACA ACTACGACAGCTTTGTGGACGCGTCGAAGAAAGTGATGCAAGGGAGGAACAGATTGCAGCAGCAGCAGGTGGTTCGTGAGGTTTTACTCTCCATGCTTCC TCCTGGCGCGCCTGACCAGTTCAGGAAATTATTTCCCCCGACGAGGTGGGCTGCGGAGTTCAATGCTGCACTGACGGTGCCTTTCTTCCAGTGGCTAGTT GGACCTTCAGAGGTTATAGAGGTGGAGATAAATGGGGTGAAGCAGAGAAGTGGAGTTCGTATAAAGAAGTGCAGGTACCTTGAGAACAGTGGATGTGTAG GAATGTGTGTGAATATGTGCAAGATCCCCACCCAAGATTTCTTCACAAATGAGTTTGGCCTCCCCCTAACCATGAACCCAAATTTTGAAGATATGAGCTG CGAAATGATATACGGGCAAACACCACCGTCGTTCGAGGAAGATCCAGTAGCCAAACAGCCTTGCTTTCCTAATATATGCTCTATGGCGAATCCCAACTCC AGTATCTGTCCCAAGTTGCAGGCTTGA
AA sequence Show only first row Show all	>Lus10001667 pacid=23154057 polypeptide=Lus10001667 locus=Lus10001667.g ID=Lus10001667.BGIv1.0 annot-version=v1.0 MTLFARKMENFASPSAVKASRNGTVSSKGWLDYNYDSFVDASKKVMQGRNRLQQQQVVREVLLSMLPPGAPDQFRKLFPPTRWAAEFNAALTVPFFQWLV GPSEVIEVEINGVKQRSGVRIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQTPPSFEEDPVAKQPCFPNICSMANPNS SICPKLQA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64680			unknown protein		Lus10001667 [exp]	0	1
AT5G11840			Protein of unknown function (D...		Lus10039247 [exp]	1.0	0.9798
AT5G52420			unknown protein		Lus10039248 [exp]	2.0	0.9612
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10017338 [exp]	3.5	0.9579
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031284 [exp]	3.5	0.9522
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10018931 [exp]	4.9	0.9461
AT5G57040			Lactoylglutathione lyase / gly...		Lus10017158 [exp]	4.9	0.9371
AT4G02920			unknown protein		Lus10029640 [exp]	5.5	0.9516
AT5G43860		ATCLH2	ARABIDOPSIS THALIANA CHLOROPHY...		Lus10039372 [exp]	5.5	0.9405
AT2G27290			Protein of unknown function (D...		Lus10005208 [exp]	5.7	0.9337
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10026322 [exp]	7.1	0.9260

Compare expression of checked genes

Lus10001667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.