Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46700 340 / 2e-118 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT2G19580 259 / 8e-87 TET2 tetraspanin2 (.1) AT4G30430 201 / 7e-64 TET9 tetraspanin9 (.1) AT3G45600 201 / 1e-63 TET3 tetraspanin3 (.1) AT2G23810 199 / 5e-63 TET8 tetraspanin8 (.1) AT4G28050 196 / 5e-62 TET7 tetraspanin7 (.1) AT3G12090 172 / 2e-52 TET6 tetraspanin6 (.1) AT5G60220 172 / 4e-52 TET4 tetraspanin4 (.1) AT1G63260 162 / 7e-49 TET10 tetraspanin10 (.1.2.3) AT1G18520 154 / 1e-45 TET11 tetraspanin11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017336 [exp] 459 / 2e-165 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10008563 [exp] 277 / 2e-93 AT2G19580 411 / 1e-146 tetraspanin2 (.1) Lus10007998 [exp] 218 / 2e-70 AT2G19580 369 / 6e-130 tetraspanin2 (.1) Lus10023216 [exp] 210 / 3e-67 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10040551 [exp] 209 / 5e-67 AT2G19580 364 / 3e-128 tetraspanin2 (.1) Lus10019965 [exp] 209 / 5e-67 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10038473 [exp] 208 / 3e-66 AT3G45600 446 / 9e-160 tetraspanin3 (.1) Lus10008891 [exp] 204 / 4e-65 AT2G23810 377 / 5e-133 tetraspanin8 (.1) Lus10015494 [exp] 201 / 7e-64 AT2G23810 370 / 2e-130 tetraspanin8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G093000 [exp] 408 / 3e-145 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.001G141400 [exp] 399 / 1e-141 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.006G150400 [exp] 280 / 8e-95 AT2G19580 367 / 5e-129 tetraspanin2 (.1) Potri.009G015100 [exp] 218 / 2e-70 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.006G177900 [exp] 205 / 2e-65 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.018G099800 [exp] 197 / 3e-62 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.010G220300 [exp] 186 / 5e-58 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.008G041600 [exp] 184 / 3e-57 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.015G055700 [exp] 162 / 7e-49 AT1G18520 196 / 6e-62 tetraspanin11 (.1) Potri.001G107200 [exp] 160 / 8e-48 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10001668 pacid=23154055 polypeptide=Lus10001668 locus=Lus10001668.g ID=Lus10001668.BGIv1.0 annot-version=v1.0 ATGGCTCTAAGCAACAATGTGATCGGAGCAATAAACTTCGTGGCAATGCTCCTCTCAATCCCGATCATCGGTGCAGGAATCTGGCTCGCAATGGAGCCAG ACAACTCATGCGTCAAGCTCCTCCAGTGGCCCATCATCATTCTAGGAATCTTCGTCCTAATCGTCGCCATCGCGGGCTTTATCGGAGCATTCTGGAGGAT CCCCTGGCTGCTCATCTTCTACCTCGTCGCAATGTTGGTCCTCATCCTCCTCCTAGCCGTCTTGGTCGTGTTTGTGTTCATGGTGACCGAAAAGGGTGCC GGTCACCCTGTTCCGAGTAGGGCCTACTTGGAGTATAATCTCGATGGCTTCTCCGGGTTCCTGCGGCGGAGGGTTCGCGGGCCGTTGAAGTGGGACCGGA TTAGGGGGTGTTTAAGTGGGAGTAATATGTGTGCTGAGCTTAACCAGAGCTATAGGATGGCTCAGGATTTCTTCAATGCTCCCATTACTCCTTTGCAGTC GGGATGCTGCAAGCCGCCAACAGAGTGCGGCTACACGTTTGTGAACCCGACATACTGGATAAGTCCAATAAACAACGCGGCGGACATGGACTGCCTGCAG TGGAGCAACGACCAGACCCAGCTCTGCTACGGCTGCGACTCATGCAAGGCCGGACTGCTAGCCAATCTCAAGGCCGAGTGGAGGAAAGCCGACATCATCC TCGTCATCACTCTGATCGCCCTGATCGTCGTCTATGTCGTCGGATGCTGTGCGTTTAGGAATGCCAAGACTGAGGACCTCTTCCGCAAGTACAAGCAAGG CTACACCTGA
AA sequence Show only first row Show all	>Lus10001668 pacid=23154055 polypeptide=Lus10001668 locus=Lus10001668.g ID=Lus10001668.BGIv1.0 annot-version=v1.0 MALSNNVIGAINFVAMLLSIPIIGAGIWLAMEPDNSCVKLLQWPIIILGIFVLIVAIAGFIGAFWRIPWLLIFYLVAMLVLILLLAVLVVFVFMVTEKGA GHPVPSRAYLEYNLDGFSGFLRRRVRGPLKWDRIRGCLSGSNMCAELNQSYRMAQDFFNAPITPLQSGCCKPPTECGYTFVNPTYWISPINNAADMDCLQ WSNDQTQLCYGCDSCKAGLLANLKAEWRKADIILVITLIALIVVYVVGCCAFRNAKTEDLFRKYKQGYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10001668 [exp]	0	1
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	1.4	0.8996
AT2G36570			Leucine-rich repeat protein ki...		Lus10017178 [exp]	1.7	0.9080
AT3G17350			unknown protein		Lus10043098 [exp]	4.0	0.8471
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	4.6	0.8910
AT1G21090			Cupredoxin superfamily protein...		Lus10018856 [exp]	5.5	0.8703
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10004962 [exp]	5.5	0.8739
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	7.2	0.8754
AT4G38660			Pathogenesis-related thaumatin...		Lus10025055 [exp]	8.9	0.8392
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016032 [exp]	10.8	0.8414
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	12.4	0.8473

Compare expression of checked genes

Lus10001668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.