Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39865 327 / 2e-110 Glutaredoxin family protein (.1) AT3G28850 278 / 6e-91 Glutaredoxin family protein (.1) AT3G57070 152 / 1e-42 Glutaredoxin family protein (.1) AT5G13810 147 / 3e-42 Glutaredoxin family protein (.1) AT2G41330 149 / 2e-41 Glutaredoxin family protein (.1) AT5G58530 136 / 6e-38 Glutaredoxin family protein (.1) AT1G64500 132 / 1e-35 Glutaredoxin family protein (.1) AT1G32760 129 / 9e-35 Glutaredoxin family protein (.1) AT4G10630 128 / 2e-34 Glutaredoxin family protein (.1) AT5G06470 123 / 3e-33 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017335 [exp] 528 / 0 AT5G39865 345 / 1e-117 Glutaredoxin family protein (.1) Lus10007256 [exp] 431 / 6e-151 AT5G39865 358 / 1e-121 Glutaredoxin family protein (.1) Lus10033238 [exp] 154 / 7e-44 AT4G10630 297 / 1e-99 Glutaredoxin family protein (.1) Lus10008270 [exp] 154 / 8e-44 AT4G10630 305 / 7e-103 Glutaredoxin family protein (.1) Lus10024164 [exp] 151 / 2e-43 AT5G13810 259 / 2e-86 Glutaredoxin family protein (.1) Lus10039537 [exp] 151 / 2e-43 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1) Lus10018025 [exp] 149 / 8e-42 AT3G57070 293 / 2e-96 Glutaredoxin family protein (.1) Lus10007517 [exp] 134 / 2e-37 AT5G58530 153 / 1e-45 Glutaredoxin family protein (.1) Lus10040949 [exp] 133 / 2e-37 AT5G58530 164 / 2e-50 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G081600 [exp] 223 / 3e-69 AT3G28850 355 / 3e-119 Glutaredoxin family protein (.1) Potri.016G038600 [exp] 174 / 6e-51 AT3G57070 317 / 5e-105 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 169 / 5e-49 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.001G448300 [exp] 161 / 1e-46 AT4G10630 285 / 6e-95 Glutaredoxin family protein (.1) Potri.003G198100 [exp] 150 / 3e-43 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.T125406 [exp] 150 / 3e-43 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 150 / 3e-43 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1) Potri.009G075600 [exp] 148 / 8e-43 AT5G58530 199 / 3e-63 Glutaredoxin family protein (.1) Potri.001G280400 [exp] 140 / 9e-40 AT5G58530 234 / 4e-77 Glutaredoxin family protein (.1) Potri.008G072200 [exp] 137 / 1e-38 AT5G58530 177 / 7e-55 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10001669 pacid=23154049 polypeptide=Lus10001669 locus=Lus10001669.g ID=Lus10001669.BGIv1.0 annot-version=v1.0 ATGGGGTGTGCTAGCTCGAAGCAATCGAAGAAACACCAGCGATGCCGGAACTGTCAATCTCCGATGCCGAGAAGCTATTCGATGCACGTCATTCACCCTC CTCAGCAGAAAGGCGACAACTACCATTTGGTAGCACTCACTTCCACCACTCTCGGCTCTCTCCAGCTTGATGATCATGATCATGATCATCAAGCTCCTTC GTCCAATTCCCATGAAGAGTTCTCAATGGGATTGATTGAAGCCAAGACATGGTCAAAGATGATCGAGGAAAAAATCCCCAAAATGCCTAATCCTAAAACG CCAAATATGATCACCCCTCCCGGGGAGCCTGAGATGATCAACACCTGGGAATTAATGGAAGGGCTGGAGGAATTAGAGTTCAGCAGCCCCTGCCGATTTG CCAATCACATCCGGAGCTTCTCTTTCGATGTGGTCGATCATATTAAGCCTAAGCTACAAGAAGAAGTAAAAGAAGAAGAAGCAGATATCATTTCAGTGTT CAAGAAAGAGTGCAGGGTGGTTGTGTACTTCACGAGCTTGCGAGGAGTGAGGAAGACGTATGAGGATTCGTGTCACGTGAGATCGATCCTGAAAGGGCTA GGGGTCCGTGTCGATGAGAGGGATGTGTCGATGCATTCGGGGTTCAAGGAAGAGTTGAGGCAACTACTAGGAGGAGTTAAAGGGTTCAGCTTGCCGAGAG TGTTCATTGGCAACAAGCACATTGGAGGAGCTGACGAAATCCGGAAAATGCATGAGGAAGGGCGGCTAGAGAAGGCCGTAGAAGGTTGCCAGAAGGCGGA TGATGAAGTGGTATGCGAAGCGTGCGGAGATGTTAGGTTCGTGCCTTGCGAGACTTGTTCGGGGAGTTGCAAGATATACTATGAAGATGATAGAGAAGAA GTTGAAGAGGGGAATGATGATGAGGTTGATTGTGGATTTCAGAGGTGTCCTGATTGCAATGAGAATGGCCTTATTCGATGTCCAATCTGCTGCAATCTGT GA
AA sequence Show only first row Show all	>Lus10001669 pacid=23154049 polypeptide=Lus10001669 locus=Lus10001669.g ID=Lus10001669.BGIv1.0 annot-version=v1.0 MGCASSKQSKKHQRCRNCQSPMPRSYSMHVIHPPQQKGDNYHLVALTSTTLGSLQLDDHDHDHQAPSSNSHEEFSMGLIEAKTWSKMIEEKIPKMPNPKT PNMITPPGEPEMINTWELMEGLEELEFSSPCRFANHIRSFSFDVVDHIKPKLQEEVKEEEADIISVFKKECRVVVYFTSLRGVRKTYEDSCHVRSILKGL GVRVDERDVSMHSGFKEELRQLLGGVKGFSLPRVFIGNKHIGGADEIRKMHEEGRLEKAVEGCQKADDEVVCEACGDVRFVPCETCSGSCKIYYEDDREE VEEGNDDEVDCGFQRCPDCNENGLIRCPICCNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39865			Glutaredoxin family protein (....		Lus10001669 [exp]	0	1
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10016801 [exp]	1.4	0.9509
AT5G39865			Glutaredoxin family protein (....		Lus10017335 [exp]	1.4	0.9443
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10022497 [exp]	3.5	0.9113
AT2G33580			Protein kinase superfamily pro...		Lus10008586 [exp]	3.9	0.9101
AT4G32020			unknown protein		Lus10001940 [exp]	4.9	0.9024
AT3G07790			DGCR14-related (.1)		Lus10006367 [exp]	5.7	0.8966
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10022281 [exp]	6.5	0.8797
AT5G11000			Plant protein of unknown funct...		Lus10017128 [exp]	7.3	0.8686
AT4G00300			fringe-related protein (.1.2)		Lus10005120 [exp]	7.9	0.9157
AT3G21570			unknown protein		Lus10012773 [exp]	10.0	0.8906

Compare expression of checked genes

Lus10001669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.