Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61880 521 / 0 CYP78A9 cytochrome p450 78a9 (.1.2) AT1G01190 518 / 1e-180 CYP78A8 "cytochrome P450, family 78, subfamily A, polypeptide 8", cytochrome P450, family 78, subfamily A, polypeptide 8 (.1) AT2G46660 515 / 1e-179 CYP78A6 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) AT1G74110 431 / 2e-146 CYP78A10 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) AT1G13710 379 / 2e-126 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT5G09970 360 / 1e-118 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT5G07990 221 / 2e-65 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G40890 206 / 6e-60 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT5G06900 187 / 6e-53 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT3G48280 185 / 3e-52 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017334 [exp] 757 / 0 AT3G61880 656 / 0.0 cytochrome p450 78a9 (.1.2) Lus10030216 [exp] 530 / 0 AT2G46660 697 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10005995 [exp] 528 / 0 AT2G46660 708 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10035844 [exp] 372 / 4e-123 AT5G09970 729 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10036627 [exp] 369 / 5e-122 AT5G09970 735 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10015788 [exp] 353 / 3e-117 AT1G13710 471 / 1e-163 KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) Lus10005780 [exp] 347 / 2e-113 AT5G09970 696 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10013150 [exp] 220 / 5e-65 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 209 / 5e-61 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G083900 [exp] 568 / 0 AT2G46660 692 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.003G146800 [exp] 567 / 0 AT2G46660 659 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.014G102700 [exp] 554 / 0 AT2G46660 723 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.002G175200 [exp] 550 / 0 AT2G46660 694 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.003G173500 [exp] 397 / 2e-133 AT1G74110 491 / 3e-170 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.001G054800 [exp] 387 / 4e-129 AT1G74110 502 / 8e-174 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.002G060900 [exp] 375 / 1e-124 AT5G09970 703 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G200400 [exp] 374 / 3e-124 AT5G09970 681 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G084500 [exp] 373 / 8e-124 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.007G081200 [exp] 368 / 7e-122 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10001670 pacid=23154044 polypeptide=Lus10001670 locus=Lus10001670.g ID=Lus10001670.BGIv1.0 annot-version=v1.0 ATGGAAACTACACGTCAAATCCACGACTCCTTCTGGCTTCTACTCCTCGCCTCAAATCCCTCTTCCCATCACACCATCCTCATCTTCCTCTTCCTCGCAA TCTTATGGCTCGTTCTCAACCTTTACCACTGGACTAACCCCGGTGGCCCCGCCTGGGGCAAGCTTCGGTTCTTCCGAACCAAGAAGAATCGAAATTACCC AACTATCCCTGGCCCCAGGGGCCTCCCGCTGGTCGGAAGCATGAATCTCATGACAAACTTGGCTCACCACAAGCTAGCCGCGGCCGCCAAACTACACCAA GCCGAGAAGCTCATGGCGTTCAGCATCGGCGAGACTCGCTTCATCGTCGCCAGCCATCCCGACGTGGCTAAGGAGATCCTCAACAGCTCGGCCTTCGCTG ACCGTCCGACCAAGGAGTCCGCTTACGGCCTCATGTTCAACCGCGCGATCGGGTTCGCCCCGTACGGTGCGTATTGGAGGACCTTGAGGAGAATTGCCGC CAATCATATGTTCAGTCCTAAGCAAATCACCTCCTCCGCTCCCCAGAGGGCCCGTATCGCTTCACAAATGACGTCACTCATCCGAAATAATAGTGAGGGA TTTCAAGTTCGAGATATACTAAAGGCGGCTTCACTCAACAACATGATGTCATCAGTCTTCGGCCGCGAGTATCGACTTGATTGTTACAACTCGGAAACTG AACTGCTTCGAGAGCTTGTCGAGGAAGGATACGATTTGTTAGGGAAACTTAACTTGTCCGACCATCTTCCTTGGCTTGCTAGCCTTGACATACAGATGAT CCGGTTCAGATGCTCCAATCTCGTCCCTAAAGTGAACAGGTTCGTTAACCGGATCATCGAGGAGCATCGGACCAGAATAATCGGTTCGCAAACTACACAT GATTTCGTTGACGTTCTCCTCTCTCTTGACGGTTCTGATAAGTTGTCTGATCATGACATGATCGCTGTTCTTTGGGAAATGATATTTCGGGGAACGGACA CAGTGGCGGTTTTGATTGAGTGGATACTGGCGAGAATGGTTTTGCACCCTGAAATCCAATCGACGGTGCAAGAAGAGCTGGATCGAGTGGTCGGGAAATC TCGGCGGTTGATGGAAACCGACATTCCGTCCATGGGTTACCTCCCAGCACTGGTGAAAGAAGGCCTCAGGCTACACCCACCTGGCCCGCTTCTATCGTGG GCCCGCTTGGCGACAACAGACACCATGATTAACGGCCACCACATACCCGCCGGGACCACGGCGATGGTTAATATGTGGGCCATCACACGGGACCCGCAGT TTTGGGCCCAGCCTTTAAAGTTCAGCCCAGACAGGTTTATATCCGGAGACGGTGGAATGGAGTTCGCCGGCGGCGAGTTTTCTGTCATGGGGAGCGACCT GAGGCTTGCTCCGTTCGGGGCGGGGAGGAGGCCATGTCCGGGACATGTCCGGGGAAGGCGCTGGGTTTCTCCACGGTGGTGTTCTGGGTGGGGACGTTGT TGCATGAGTTTGAATGGTTCAATGGTTCGACCGATGAGCCGGTTGATCTGTCCGAGAAGTTGA
AA sequence Show only first row Show all	>Lus10001670 pacid=23154044 polypeptide=Lus10001670 locus=Lus10001670.g ID=Lus10001670.BGIv1.0 annot-version=v1.0 METTRQIHDSFWLLLLASNPSSHHTILIFLFLAILWLVLNLYHWTNPGGPAWGKLRFFRTKKNRNYPTIPGPRGLPLVGSMNLMTNLAHHKLAAAAKLHQ AEKLMAFSIGETRFIVASHPDVAKEILNSSAFADRPTKESAYGLMFNRAIGFAPYGAYWRTLRRIAANHMFSPKQITSSAPQRARIASQMTSLIRNNSEG FQVRDILKAASLNNMMSSVFGREYRLDCYNSETELLRELVEEGYDLLGKLNLSDHLPWLASLDIQMIRFRCSNLVPKVNRFVNRIIEEHRTRIIGSQTTH DFVDVLLSLDGSDKLSDHDMIAVLWEMIFRGTDTVAVLIEWILARMVLHPEIQSTVQEELDRVVGKSRRLMETDIPSMGYLPALVKEGLRLHPPGPLLSW ARLATTDTMINGHHIPAGTTAMVNMWAITRDPQFWAQPLKFSPDRFISGDGGMEFAGGEFSVMGSDLRLAPFGAGRRPCPGHVRGRRWVSPRWCSGWGRC CMSLNGSMVRPMSRLICPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10001670 [exp]	0	1
AT5G17510			unknown protein		Lus10024979 [exp]	1.0	0.8551
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10016733 [exp]	2.0	0.8536
AT3G10430			F-box and associated interacti...		Lus10007847 [exp]	6.7	0.7896
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10024978 [exp]	7.7	0.8087
AT4G28100			unknown protein		Lus10018524 [exp]	7.9	0.8355
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10038607 [exp]	8.1	0.8236
AT3G18880			Nucleic acid-binding, OB-fold-...		Lus10028815 [exp]	14.1	0.7934
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10016451 [exp]	14.5	0.7713
AT5G57970			DNA glycosylase superfamily pr...		Lus10026083 [exp]	14.8	0.7827
AT3G61880		CYP78A9	cytochrome p450 78a9 (.1.2)		Lus10017334 [exp]	15.7	0.7461

Compare expression of checked genes

Lus10001670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.