Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64660 241 / 5e-79 ATMGL methionine gamma-lyase (.1) AT3G01120 72 / 4e-15 AtCGS1, ATCYS1, CGS1, MTO1 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT3G57050 66 / 8e-13 CBL cystathionine beta-lyase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017333 [exp] 272 / 7e-91 AT1G64660 676 / 0.0 methionine gamma-lyase (.1) Lus10000880 [exp] 233 / 1e-75 AT1G64660 639 / 0.0 methionine gamma-lyase (.1) Lus10000881 [exp] 219 / 1e-70 AT1G64660 588 / 0.0 methionine gamma-lyase (.1) Lus10001672 [exp] 197 / 1e-62 AT1G64660 546 / 0.0 methionine gamma-lyase (.1) Lus10033233 [exp] 160 / 9e-49 AT1G64660 377 / 8e-130 methionine gamma-lyase (.1) Lus10030694 [exp] 74 / 1e-15 AT3G01120 702 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10027313 [exp] 62 / 1e-11 AT3G57050 683 / 0.0 cystathionine beta-lyase (.1.2.3) Lus10039016 [exp] 62 / 1e-11 AT3G57050 688 / 0.0 cystathionine beta-lyase (.1.2.3) Lus10005226 [exp] 54 / 1e-08 AT3G01120 741 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G084000 [exp] 250 / 3e-82 AT1G64660 689 / 0.0 methionine gamma-lyase (.1) Potri.003G146600 [exp] 124 / 2e-35 AT1G64660 239 / 1e-76 methionine gamma-lyase (.1) Potri.017G086500 [exp] 65 / 2e-12 AT3G01120 720 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.016G038200 [exp] 64 / 4e-12 AT3G57050 714 / 0.0 cystathionine beta-lyase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF01053 [flax] [poplar] Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10001671 pacid=23154045 polypeptide=Lus10001671 locus=Lus10001671.g ID=Lus10001671.BGIv1.0 annot-version=v1.0 ATGTCGATTGAGCATTCCGCCACGTTCACCGTTATGGAGCCGAAGACCATGCGCCGCATGTCCACCGACGACCTCGACCCTGACCGTGATTTCTTTGTCT ACAACCGCCATTTCAACGCCACCGTCCTCAACATTGGCCTCCATATGGCCGCCCTCGAAGGCACCGAAGCGGCCTGTTGCACCGCTAGTGCATCGGTTAT GTTACAGCTCGGCAGCAACGGAGGACACGTGGTGGCGTCACACACGTTGTACGGTGGGATGCACGCGCTGCTGACGCATTTCCAGCCGAGGGCATGCAAC ATAACGATGTTGTTCATGAACATAGTGGATCTTGAAGCGGTGAGGAATGCGGTGGATGAAGGGAAGACTAATTTTCTGTATTTCGAGTCGATGTCCAACC CGACACTCACCGTCGCGGACATATCAAAGCTCAACCGGATCACTCACGATAAGGGAGTGACGGTGGTGGTTGATAACACGTTCGCTCCGATGATGCTATC CCCAGTATCTCGACTCCCACCGTGTCAATAA
AA sequence Show only first row Show all	>Lus10001671 pacid=23154045 polypeptide=Lus10001671 locus=Lus10001671.g ID=Lus10001671.BGIv1.0 annot-version=v1.0 MSIEHSATFTVMEPKTMRRMSTDDLDPDRDFFVYNRHFNATVLNIGLHMAALEGTEAACCTASASVMLQLGSNGGHVVASHTLYGGMHALLTHFQPRACN ITMLFMNIVDLEAVRNAVDEGKTNFLYFESMSNPTLTVADISKLNRITHDKGVTVVVDNTFAPMMLSPVSRLPPCQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10001671 [exp]	0	1
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	1.0	1.0000
AT5G64820			unknown protein		Lus10025572 [exp]	2.0	1.0000
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	2.4	1.0000
					Lus10007403 [exp]	2.8	1.0000
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10017474 [exp]	3.2	1.0000
					Lus10038707 [exp]	3.5	1.0000
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10043149 [exp]	3.7	1.0000
					Lus10042706 [exp]	15.5	1.0000
					Lus10006079 [exp]	17.2	1.0000
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10002972 [exp]	18.8	1.0000

Compare expression of checked genes

Lus10001671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.