Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64660 528 / 0 ATMGL methionine gamma-lyase (.1) AT3G01120 150 / 2e-40 AtCGS1, ATCYS1, CGS1, MTO1 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G33320 129 / 1e-33 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT3G57050 118 / 2e-29 CBL cystathionine beta-lyase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017333 [exp] 646 / 0 AT1G64660 676 / 0.0 methionine gamma-lyase (.1) Lus10000880 [exp] 548 / 0 AT1G64660 639 / 0.0 methionine gamma-lyase (.1) Lus10000881 [exp] 504 / 2e-179 AT1G64660 588 / 0.0 methionine gamma-lyase (.1) Lus10033233 [exp] 400 / 8e-140 AT1G64660 377 / 8e-130 methionine gamma-lyase (.1) Lus10000074 [exp] 293 / 8e-100 AT1G64660 244 / 2e-80 methionine gamma-lyase (.1) Lus10001671 [exp] 198 / 1e-62 AT1G64660 242 / 2e-79 methionine gamma-lyase (.1) Lus10030694 [exp] 146 / 6e-39 AT3G01120 702 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10005226 [exp] 127 / 5e-32 AT3G01120 741 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10027313 [exp] 115 / 4e-28 AT3G57050 683 / 0.0 cystathionine beta-lyase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G084000 [exp] 554 / 0 AT1G64660 689 / 0.0 methionine gamma-lyase (.1) Potri.003G187032 [exp] 280 / 4e-94 AT1G64660 288 / 2e-96 methionine gamma-lyase (.1) Potri.003G146600 [exp] 169 / 8e-50 AT1G64660 239 / 1e-76 methionine gamma-lyase (.1) Potri.017G086500 [exp] 140 / 8e-37 AT3G01120 720 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.016G038200 [exp] 114 / 8e-28 AT3G57050 714 / 0.0 cystathionine beta-lyase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF01053 [flax] [poplar] Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10001672 pacid=23154059 polypeptide=Lus10001672 locus=Lus10001672.g ID=Lus10001672.BGIv1.0 annot-version=v1.0 ATGAGATTTTCCCGGCGGCGAAAAAAGCCATGCTGCCCCCGGGCGGGGGCTGCTGGGAGGATCCTGCCGCCGCCTTGGCTGCCGCACGCCATGAGTTTGG CGAACCGCCAGATGGCTGCCCTTGAAGGCACCGAGGCCGCTTATTGCACCGCCAGCGGAATGTCTGCGATAGCATCGGTGATGCTGCAGCTGTGCGGCAG CGGGGGACACGTGGTGGCGTCGCACACGCTGTACGGTGGGACGCACGCGCTGCTGACGCATTTCCTGCCGAGGGCATGCAACATAACGACGTCGTTCGTG GACATAGTGGATCTGGAAGCGGTGAGGGGTGCGGTGGTCGAAGGGAAGACTAATGTTCTGTATTTCGAGTCGATGTCCAACCCGACACTGACAGTGGCGA ACATACCGGAGCTCAGCCGGATCGCTCACGATAAGGGCGTGACGGTGGTGGTCGACAACACGTTTGCTCCGATGGTGCTGTCTCCGGCGAGACTAGGTGC TGACGTGGTCGTCCATAGCGTTTCCAAGTTCATCAGCGGGGGTGCTGACATCATTGCAGGAGCGGTGTGTGGGCCAGCAAGCCTAGTGAACTCAATGATG GACCTCCGCCAAGGAGCAATAATGCTACTTGGGCCGACAATGAACGCCAAAGTGGCCTTCGAGCTCTCAGAGAGAGTCCCTCACTTGGGCCTGAGGATGA AAGAGCACTCCAACAGAGCAATGGTTTACGCCGCCAGGATGAAGAAAATGGGCCTGAAAGTCATCTACCCGGGCCTGGAAGACCACCCGCAGCACCAACT CCTCAAGTCCTTGGCCAACAAGGACTACGGCTTCGGCGGGCTCCTGTCCCTCGACATGGTGACCGAGGACCGGGCCAACCGGCTGATGAACCAGCTCCAG AATGCCACCCAGTTCGGGTTCATGGCCGTCAGCCTGGGCTACTACGAGACCCTCATGTCGTGCTCGGGGAGCAGCACCAGTAGCGAGATGAACGAGGAGG AGAAGCAAGTCGCGGGGATCTCGCCGGGGTTGATTAGGATGTCGATCGGGTATGTCGGGAATGTGGAGCAGAAGTGGAGCCAGTTCGAGCGGGCGGTTTC CAGACTGCCCAAGGAAAAAGATCGAGATTGA
AA sequence Show only first row Show all	>Lus10001672 pacid=23154059 polypeptide=Lus10001672 locus=Lus10001672.g ID=Lus10001672.BGIv1.0 annot-version=v1.0 MRFSRRRKKPCCPRAGAAGRILPPPWLPHAMSLANRQMAALEGTEAAYCTASGMSAIASVMLQLCGSGGHVVASHTLYGGTHALLTHFLPRACNITTSFV DIVDLEAVRGAVVEGKTNVLYFESMSNPTLTVANIPELSRIAHDKGVTVVVDNTFAPMVLSPARLGADVVVHSVSKFISGGADIIAGAVCGPASLVNSMM DLRQGAIMLLGPTMNAKVAFELSERVPHLGLRMKEHSNRAMVYAARMKKMGLKVIYPGLEDHPQHQLLKSLANKDYGFGGLLSLDMVTEDRANRLMNQLQ NATQFGFMAVSLGYYETLMSCSGSSTSSEMNEEEKQVAGISPGLIRMSIGYVGNVEQKWSQFERAVSRLPKEKDRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10001672 [exp]	0	1
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10000074 [exp]	1.0	0.9503
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011013 [exp]	9.2	0.8089
AT5G50410			unknown protein		Lus10017246 [exp]	15.6	0.7699
AT1G15530			Concanavalin A-like lectin pro...		Lus10014037 [exp]	22.4	0.7692
AT2G15220			Plant basic secretory protein ...		Lus10019804 [exp]	49.0	0.7615
AT1G31720			Protein of unknown function (D...		Lus10034746 [exp]	73.0	0.7592
AT3G19950			RING/U-box superfamily protein...		Lus10033682 [exp]	144.2	0.7006
AT1G48820			Terpenoid cyclases/Protein pre...		Lus10008613 [exp]	157.3	0.7115
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006553 [exp]	164.3	0.7039
AT3G19920			unknown protein		Lus10017384 [exp]	205.4	0.7032

Compare expression of checked genes

Lus10001672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.