Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50790 470 / 4e-165 esterase/lipase/thioesterase family protein (.1) AT5G49950 156 / 2e-42 alpha/beta-Hydrolases superfamily protein (.1) AT1G34340 152 / 5e-41 alpha/beta-Hydrolases superfamily protein (.1) AT2G03140 126 / 6e-31 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017332 [exp] 510 / 0 AT3G50790 431 / 9e-150 esterase/lipase/thioesterase family protein (.1) Lus10017327 [exp] 179 / 3e-55 AT3G50790 102 / 9e-27 esterase/lipase/thioesterase family protein (.1) Lus10035744 [exp] 161 / 7e-44 AT5G49950 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037322 [exp] 157 / 1e-42 AT5G49950 632 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037325 [exp] 156 / 4e-42 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036590 [exp] 154 / 2e-41 AT5G49950 638 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035739 [exp] 154 / 3e-41 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10034894 [exp] 125 / 8e-31 AT2G03140 697 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033426 [exp] 122 / 1e-29 AT2G03140 1245 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G146500 [exp] 488 / 5e-172 AT3G50790 512 / 0.0 esterase/lipase/thioesterase family protein (.1) Potri.004G223100 [exp] 163 / 1e-44 AT5G49950 648 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G115000 [exp] 152 / 8e-41 AT1G34340 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G136900 [exp] 112 / 2e-26 AT2G03140 1356 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10001673 pacid=23154048 polypeptide=Lus10001673 locus=Lus10001673.g ID=Lus10001673.BGIv1.0 annot-version=v1.0 ATGGCGCCACTCAGCTGGGGCTCATTACCTACCACTCCTCCATTCCCATTCAACTTCCTTCGCCGCTCGTCGAAACCCATCTCCACCTTTCGATTCTGCT CCCCGATGGCTAGCTACACCAACCCCCCTCTTCCTCATCCTCAACCTCCCCACCCCTCACTCGAAGTCTCCGGCGGCGGCAAGGATCTCTTCCTCCCTGC ACTCAAGACAATAAACCACCCTTACGACGCTTACCCTCTCGTCGCCTCCAATCGCCACGTCGAGACCATCTTCGCCTCCTTCTATCGCTCCAAACCTGAT GTCAAATACAAGCGAGAGGTCCTCCGTATGAAGGACGACGGCTCCGTTTCCCTCGATTGGGTTTCCGGCGACGATCGCCGATTGCCCCGCGAATCTCCGC TTCTCATTCTGCTGCCGGGTTTAACCGGAGGTAGCCAAGATTCGTACGTTAGGCATATGTTGATTAGAGCCAGAAGCAAAGGGTGGCGCGTCGTCGTTTT CAATAGCCGTGGCTGCGGAAACAGTCCTGTCACCACTCCTCAGTTCTACTCGGCTTCGTTTTTAGGAGACATTCGAGAAGTAGTGGCTCATGTTGGCGGT AGATATCCAGATGCCAATTTGTATGCGATTGGTTGGTCTCTTGGTGCCAATATTCTTGTCAATTACTTGGCTCAGGATTCTGATGAGACTAGTCGACTAT CTGGTGCGGTGTCCTTGTGTAATCCTTTCAATTTGGTCATTGCAGACCAGGACTTCAGAAAGGGGTTCAATAACATCTATGATAAATCTCTTTCAAAATC CCTCCGTAGAATTTTCAACAAGCATGCACTTCTGTTCGAAGATATCGGTGGCGAGTTCAACATCAAGCTGGCTGCTAATGCCAGGACTGTCAGGGAATTT GATGATGGACTGACCCGAGTTTCATTTGGTTTCAAGTCGGTGGATGAGTACTACTCGAAATCCAGCAGTTCGGATTCGATCAAGCATGTTCGTAAGCCTC TGCTCTGCATCCAGGCTGCCAATGATCCAATTGCTCCTGCAAGGGGGATACCCAGAAAAGATATCATGGAAAACCCCAACTGTTTGCTGATTGTAACACC AAAGGGGGGACATCTGGGATGGGTTGCTGGCGGTGGAGCTCCGTTCGGAGCTCCATGGACAGACCCCATAGTAATGGATTTCCTGGAACATCTGGAGGGA GCTGGCTCTTCATCATCTCCAGTTCTTTCTCAAACTCAAATCCCCATGACCGCACAGAAGCTTGAATAA
AA sequence Show only first row Show all	>Lus10001673 pacid=23154048 polypeptide=Lus10001673 locus=Lus10001673.g ID=Lus10001673.BGIv1.0 annot-version=v1.0 MAPLSWGSLPTTPPFPFNFLRRSSKPISTFRFCSPMASYTNPPLPHPQPPHPSLEVSGGGKDLFLPALKTINHPYDAYPLVASNRHVETIFASFYRSKPD VKYKREVLRMKDDGSVSLDWVSGDDRRLPRESPLLILLPGLTGGSQDSYVRHMLIRARSKGWRVVVFNSRGCGNSPVTTPQFYSASFLGDIREVVAHVGG RYPDANLYAIGWSLGANILVNYLAQDSDETSRLSGAVSLCNPFNLVIADQDFRKGFNNIYDKSLSKSLRRIFNKHALLFEDIGGEFNIKLAANARTVREF DDGLTRVSFGFKSVDEYYSKSSSSDSIKHVRKPLLCIQAANDPIAPARGIPRKDIMENPNCLLIVTPKGGHLGWVAGGGAPFGAPWTDPIVMDFLEHLEG AGSSSSPVLSQTQIPMTAQKLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50790			esterase/lipase/thioesterase f...		Lus10001673 [exp]	0	1
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020468 [exp]	12.6	0.8085
AT5G65500			U-box domain-containing protei...		Lus10035947 [exp]	19.3	0.8095
AT1G68260			Thioesterase superfamily prote...		Lus10035143 [exp]	19.7	0.8108
AT2G26800			Aldolase superfamily protein (...		Lus10036056 [exp]	20.0	0.8060
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10029454 [exp]	24.9	0.8105
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Lus10040094 [exp]	42.1	0.7374
AT5G47800			Phototropic-responsive NPH3 fa...		Lus10038763 [exp]	44.1	0.8075
AT3G05630		PLDP2, PDLZ2, P...	PHOSPHOLIPASE D ZETA 2, phosph...		Lus10020672 [exp]	46.5	0.7574
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10009564 [exp]	48.2	0.7961
AT2G15860			unknown protein		Lus10023852 [exp]	53.7	0.7569

Compare expression of checked genes

Lus10001673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.