Plant FIBer expression Database

Lus10001675 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G41950 645 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT3G27070 42 / 0.0005 TOM20-1 translocase outer membrane 20-1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017329
[exp]
798 / 0 AT5G41950 620 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10025650
[exp]
50 / 4e-06 AT5G41950 47 / 3e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10018184
[exp]
47 / 4e-05 AT5G41950 47 / 4e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G146200
[exp]
693 / 0 AT5G41950 683 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.011G050600
[exp]
51 / 1e-06 AT5G41950 49 / 1e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF06552 TOM20_plant Plant specific mitochondrial import receptor subunit TOM20
Representative CDS sequence
>Lus10001675 pacid=23154051 polypeptide=Lus10001675 locus=Lus10001675.g ID=Lus10001675.BGIv1.0 annot-version=v1.0
ATGTCGACGAATGCGGAAGAGCCCGAATTCAAGGACGCGGCCGAGGGTGCCTCTCCGATGGCAGCATCAGGACGGATGACGACGGACCTACAAGAAGCTT
CATCGGAGCCGTTGCCGGCACCGGAATCCGTGCTACAAGAAAATCCAGGATCTGGGTCACTAGCAGCACAAGTGCCAGAGCCCGTATCCGTACCCGAGCA
CGAAGCTGATCCAGAACCAGCTCCGCCAGCAGTGACCAATTCGGATCCCGTGGTTGAGGAGGAACCCAAAGCGGCTCCTCCGGTTGAGTCCACTGGAGGA
GAGCCCGAGTCTCCATCTAATGACCCAGGAGCTCGCCCGCCACAGCTGCGCAAGGACGATGGCAACCGGACGTTTACGATGAGGGAGTTGCTAACTGAGT
TGAAAACCGAGGAAGGAGAAGATGCCAACTCTCCTTACAGTCAAGAATCGCCACAACAACATGCAGCCGAACAGACCAATGCTGCCATGGAGTTGATCAA
TAGTATCACTGGTGTGGATGAGGAGGGTCGATCTCGGCAAAGAATCCTAACTTTTGCTGCGAAGAGGTATGCCAGTGCAATTGAGAGAAATCCCGATGAC
TATGACGCCCTTTACAATTGGGCATTGGTTCTTCAGGAAAGCGCAGACAATGTTAGCCCAGAATCAACCTCACCTTCAAAAGATGCTCTGCTTGAGGAAG
CTTGCAAAAAATATGACGAGGCTACCCGACTTTGCCCTACACTGCATGATGCTTTCTATAATTGGGCTATAGCCATTTCTGATCGAGCCAAAATGCGTGG
CCGAACAAAGGAGGCTGAAGAACTCTGGAAGCAGGCAACAAAAAACTATGAAAAAGCTGTGCAACTTAACTGGAACAGTCCACAGGCGCTTAACAATTGG
GGACTCGCTCTACAGGAACTCAGTGCTATTGTTCCTGCTCGAGAAAAGCAAACAATTGTGAGGACAGCAATTAGTAAGTTCCGAGCTGCAATAAGATTGC
AATTTGATTTTCATCGAGCAATCTACAACCTTGGGACTGTTCTGTATGCATTAGCAGAGGACACATTGAGAGCTGGTACAGCAACGAATCCTAAGGATGT
TTCCTCTAATGAGTTGTACAGCCAGTCTGCTATTTACATCGCTGCTGCTCATGCATTGAAGCCAAACTACTCTGTATACAGCAGCGCGTTACGGCTTGTA
CGTTCCATGTTACCACTGCCATATCTAAAAGTTGGATATCTCACTGCACCGCCAGCCGGACAACCAATAGCTCCCCATAATGACTGGAAAAGAGCACAAT
TCGTATTGAATCATGAAGGACTCCAGCAGTATGTCAAGCCCGATCCAAAGCAAGCACCGCAAGGCTTATCGAGGAGATCGGATGCAGGTAGTAACGACAA
GAAGACTATCAAAGTCGAAGTTGCGGATATTATTTCGGTATCAGCATGCACAGATTTGACGTTGCCCCCTGGTGCCGCCCTTTGTATTGATACAGTTCAG
GGACCAGTTTTCTTGATTGCTGATTCGTGGGAGTACTTGGATGGATGGCTCGATGCGATTCGTCTCGTGTACACGATCTACGCACGAGGTAAGAGCGACG
TCCTCGCTTCCATCGTAACCAGCTGA
AA sequence
>Lus10001675 pacid=23154051 polypeptide=Lus10001675 locus=Lus10001675.g ID=Lus10001675.BGIv1.0 annot-version=v1.0
MSTNAEEPEFKDAAEGASPMAASGRMTTDLQEASSEPLPAPESVLQENPGSGSLAAQVPEPVSVPEHEADPEPAPPAVTNSDPVVEEEPKAAPPVESTGG
EPESPSNDPGARPPQLRKDDGNRTFTMRELLTELKTEEGEDANSPYSQESPQQHAAEQTNAAMELINSITGVDEEGRSRQRILTFAAKRYASAIERNPDD
YDALYNWALVLQESADNVSPESTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW
GLALQELSAIVPAREKQTIVRTAISKFRAAIRLQFDFHRAIYNLGTVLYALAEDTLRAGTATNPKDVSSNELYSQSAIYIAAAHALKPNYSVYSSALRLV
RSMLPLPYLKVGYLTAPPAGQPIAPHNDWKRAQFVLNHEGLQQYVKPDPKQAPQGLSRRSDAGSNDKKTIKVEVADIISVSACTDLTLPPGAALCIDTVQ
GPVFLIADSWEYLDGWLDAIRLVYTIYARGKSDVLASIVTS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G41950 Tetratricopeptide repeat (TPR)... Lus10001675
[exp]
0 1
AT1G67930 Golgi transport complex protei... Lus10020753
[exp]
1.0 0.9376
AT5G38460 ALG6, ALG8 glycosyltransferase... Lus10017594
[exp]
2.2 0.9235
AT5G59740 UDP-N-acetylglucosamine (UAA) ... Lus10040866
[exp]
2.6 0.9188
AT5G45330 DCP5-L decapping 5-like (.1) Lus10035052
[exp]
3.3 0.9089
AT3G02090 MPPBETA Insulinase (Peptidase family M... Lus10004937
[exp]
3.5 0.9347
AT1G27600 IRX9-L, I9H IRREGULAR XYLEM 9-LIKE, IRREGU... Lus10007692
[exp]
4.0 0.9156
AT4G32330 TPX2 (targeting protein for Xk... Lus10002012
[exp]
4.2 0.9299
AT4G34450 coatomer gamma-2 subunit, puta... Lus10026336
[exp]
4.5 0.9291
AT5G51430 EYE EMBRYO YELLOW, conserved oligo... Lus10031731
[exp]
7.7 0.9001
AT4G30920 AtLAP2, LAP2 leucyl aminopeptidase 2, Cytos... Lus10022152
[exp]
8.7 0.8850

Lus10001675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.