Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24110 125 / 1e-34 unknown protein AT1G19400 56 / 7e-09 Erythronate-4-phosphate dehydrogenase family protein (.1.2) AT1G75180 47 / 5e-06 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017328 [exp] 374 / 4e-132 AT4G24110 168 / 3e-51 unknown protein Lus10042323 [exp] 49 / 1e-06 AT1G19400 238 / 3e-77 Erythronate-4-phosphate dehydrogenase family protein (.1.2) Lus10010803 [exp] 49 / 2e-06 AT1G75180 357 / 1e-123 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10016311 [exp] 49 / 2e-06 AT1G75180 353 / 2e-122 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10007912 [exp] 42 / 0.0002 AT1G01500 350 / 1e-120 Erythronate-4-phosphate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G082500 [exp] 143 / 1e-41 AT4G24110 135 / 1e-38 unknown protein Potri.003G147800 [exp] 130 / 1e-36 AT4G24110 108 / 2e-28 unknown protein Potri.002G163300 [exp] 42 / 0.0001 AT1G01500 354 / 1e-122 Erythronate-4-phosphate dehydrogenase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001676 pacid=23154047 polypeptide=Lus10001676 locus=Lus10001676.g ID=Lus10001676.BGIv1.0 annot-version=v1.0 ATGTGTAGAACGACTGATTTCGATAGCCGACTCAGGAACCCACTGAAGATCAAAGCTTTCTTCTGCCGCTTTTCCTGCTTCCACCGCCGGACATCGTTCC CTGACACTTTAACTCTCTGTTTCCCGCCTCGTATCAACGGGACGGAGCTCCAGATCGACGGATCCAAGATCCGACCCGACACCAACGCGTTCCTCGACCT CCATAAGCTCATCGACGTCAAAACCAAACCCGGAGAGGCAATCTACGGCTCTAGAGAATCTATCCAGGCGACTGGAGGGGTTAGCTTCGAGGTTTATCTA AAGGACGAGAGAGTTCTGGAAGGGATCTTTACTAAAGACGAGGATCAAGGGTGGAATTTGGACTGTAGGAATCGAGTTGAGAATGCTGCTGTTGGATCCG GTGTTGTGGATGTTTGTGTGGCGGTGGCAGATCAGATGGCGCCGTTGAGTGAGCGGGTGAAGCTGGTGGCGGCGGCGAAGAGAGGGAGGTGCAGGCGGAA GGGTGGGGTTGATAGGCTGGTGGTGATCCCGGAGGATGCGGAGAATGATGATGACGATGGTGGTGGATCGGACGGTCGGTGTTGCTGCGATTGTGATGGT ACGGATAGTGGATCGAACGATGAGGATTGGGAGGAGATAAGTGGGCCGGAAGATGGGACCGAGGATTTGGAGGGAGTTGGGTGGGCTGTGGATGTTGGGC TTTGGGTTATGTGTTTGGGTGTGGGCTATTTGGTTTCCAAAGCCTCATCCAAACGGCTAAGGCGTATGAGGATACTCTGA
AA sequence Show only first row Show all	>Lus10001676 pacid=23154047 polypeptide=Lus10001676 locus=Lus10001676.g ID=Lus10001676.BGIv1.0 annot-version=v1.0 MCRTTDFDSRLRNPLKIKAFFCRFSCFHRRTSFPDTLTLCFPPRINGTELQIDGSKIRPDTNAFLDLHKLIDVKTKPGEAIYGSRESIQATGGVSFEVYL KDERVLEGIFTKDEDQGWNLDCRNRVENAAVGSGVVDVCVAVADQMAPLSERVKLVAAAKRGRCRRKGGVDRLVVIPEDAENDDDDGGGSDGRCCCDCDG TDSGSNDEDWEEISGPEDGTEDLEGVGWAVDVGLWVMCLGVGYLVSKASSKRLRRMRIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24110			unknown protein		Lus10001676 [exp]	0	1
AT4G10270			Wound-responsive family protei...		Lus10018530 [exp]	1.0	0.9883
AT4G10265			Wound-responsive family protei...		Lus10018531 [exp]	1.7	0.9791
AT4G10265			Wound-responsive family protei...		Lus10018532 [exp]	2.0	0.9661
AT4G10265			Wound-responsive family protei...		Lus10018533 [exp]	2.0	0.9842
AT5G08570			Pyruvate kinase family protein...		Lus10013449 [exp]	3.2	0.9659
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10008643 [exp]	4.6	0.9656
AT4G10265			Wound-responsive family protei...		Lus10039751 [exp]	6.7	0.9655
AT4G10265			Wound-responsive family protei...		Lus10039755 [exp]	7.1	0.9640
AT4G10270			Wound-responsive family protei...		Lus10039752 [exp]	7.1	0.9542
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10003384 [exp]	7.2	0.9597

Compare expression of checked genes

Lus10001676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.