Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10730 831 / 0 Protein kinase superfamily protein (.1) AT4G24100 827 / 0 Protein kinase superfamily protein (.1) AT5G14720 505 / 5e-168 Protein kinase superfamily protein (.1) AT1G79640 494 / 1e-163 Protein kinase superfamily protein (.1.2) AT1G70430 432 / 8e-141 Protein kinase superfamily protein (.1) AT4G14480 298 / 3e-91 Protein kinase superfamily protein (.1) AT1G23700 285 / 1e-86 Protein kinase superfamily protein (.1) AT1G53165 217 / 6e-60 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT3G15220 216 / 2e-59 Protein kinase superfamily protein (.1) AT1G69220 216 / 7e-59 SIK1 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017326 [exp] 1578 / 0 AT4G10730 883 / 0.0 Protein kinase superfamily protein (.1) Lus10033230 [exp] 1056 / 0 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10000878 [exp] 1026 / 0 AT4G24100 887 / 0.0 Protein kinase superfamily protein (.1) Lus10014542 [exp] 507 / 7e-168 AT5G14720 895 / 0.0 Protein kinase superfamily protein (.1) Lus10032144 [exp] 490 / 2e-162 AT5G14720 838 / 0.0 Protein kinase superfamily protein (.1) Lus10026108 [exp] 474 / 4e-156 AT1G79640 789 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000416 [exp] 474 / 1e-155 AT1G79640 760 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021882 [exp] 302 / 1e-92 AT4G14480 501 / 6e-175 Protein kinase superfamily protein (.1) Lus10041162 [exp] 207 / 1e-60 AT4G14480 310 / 1e-103 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G084700 [exp] 955 / 0 AT4G10730 905 / 0.0 Protein kinase superfamily protein (.1) Potri.003G146000 [exp] 951 / 0 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.001G349300 [exp] 499 / 2e-165 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.003G186700 [exp] 499 / 3e-165 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G037900 [exp] 497 / 5e-165 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G163800 [exp] 319 / 1e-98 AT4G14480 504 / 1e-175 Protein kinase superfamily protein (.1) Potri.004G194700 [exp] 255 / 1e-75 AT4G14480 356 / 1e-118 Protein kinase superfamily protein (.1) Potri.016G049500 [exp] 255 / 9e-75 AT4G14480 368 / 2e-122 Protein kinase superfamily protein (.1) Potri.010G157400 [exp] 216 / 6e-59 AT1G69220 855 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G397600 [exp] 214 / 9e-59 AT3G15220 828 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001677 pacid=23154041 polypeptide=Lus10001677 locus=Lus10001677.g ID=Lus10001677.BGIv1.0 annot-version=v1.0 ATGCCAGTAGGGATGGGAGCTGGACAGAGGATGCATTCTGCCAATCCTAACGACTATAAGCTTCTCGAAGAAGTCGGTCATGGCGCCAGTGCCACGGTTC ACAGAGCGATTTTTCTTCCGTCGAATGAAGTCGTTGCTATTAAGTGCTTGGATCTCGATCGATGCAATAGCAATCTGGATGATATAAGGAAAGAAGCTCA AACCATGACATTGATAGACCATCCAAATGTTATTAAGGCCTTCTGTTCATTCGTTGTTGACCGGTTTCTGTGGGTGGTCATGCCCTTCATGGCCGAGGGT TCTTGTTTGCACCTTATGCAAATAGCATATACAGATGGATTTGAAGAAGCTGCTATCCGTTCCATTCTTAAAGAAACTCTTAAGGCCTTAGATTACCTAC ATTGTCAAGGGCACATTCATCGTGATGTCAAGGCTGGAAATATACTATTGGATACCAATGGAATTGTAAAACTAGCTGATTTTGGTGTGTCTGCTTGCAT GTTTGATACTGGTGACAGACAACGTGCTAGAAATACTTTTGTTGGAACTCCTTGCTGGATGGCACCTGAAGTCTTGCAGCCAGGAAGTGGATATGATTCA AAGGCTGATATATGGTCCTTTGGTATTACGGCGTTGGAGATGGCTCATGGTCATGCACCCTTCTCAAAATACCCCCCAATGAAGGTACTTCTGATGACCA TACAGAATGCTCCTCCTGGACTTGATTATGATCGTGATAAAAAGTTTTCCAAGTCTTTTAAAGAGATGGTTGCTATGTGCCTGGTAAAAGATCAAACAAG GAGGCCGACTGCAGATAAGTTGTTGAAACACTCATTTTTCAAGCATGTAAAGCCTCCAGAGCTGTCTGTGAAGAAATTGTTTGCGGATTTGCCTCCACTA TGGAATCGTGTGAAAACACTACAGATTAAAGATGCTGCACAATTAGCTCTAAAAAGAATGCCCTCTGCTGATCAAGAAGCTCTATCACAGAGTGAGTACA AGCGAGGAGTTAGTGCCTGGAATTTTGATATTGAGGATCTGAAAGCCCAAGCATCATTGGTAAGAGATGATGATGACACCACTGAGACTAAATATGAAGA TGAAAGCTTGAAAGTCTCTGGTGGCGATAAGGCTTTAACCAATGGGCATACTCATCATGTGAAGCATGATTACCCTTCTGAAATTCCTCAACTAGAGCGT TCAACTGAAGCCTCACTATCTGAGAGCTTGAACCAAAAGGTCAAGCCTCTGGATAGTGATATACTAGAAGCAGGGCAAGAGAATCTTGGAATCAACAGAA ATGGCTCGAGCCTAGAGTTGGAAGCATCAACATCAGAAAAGGATTTGATGCAGTCCAAGGCTAAAGTAGCGAGAGGTCGTCAAACTCAGAGTGGGCCTCT CATGCCTGGTAATGGATTAGGCCGGTCATCATTTGAAAGGGGTAGGAGTTCAGAAAGGTTTGAGAGTGAAGTGCAACCAACCAATGAAACACCCACGAGA AAAGCTCCAAGCTTTAGTGGTCCGTTGATGCTCCAAAACCGAACTTTAGCAAATAGTTTGTCGGCTCCCATAAAGTCAACTGGTGGATTAAGAGATCCTC TGGATGATAAGACTAAGACTAATCTGGTACAAATCAAAGGGCGATTCTCAGTAACATCAGAAAATTTGGACCTTGCAAAGGATGTTCCCGCCAGTGCTGT TCAGCGCCGATCCTCACAGACTTCACCGTTGCGAAAATCTGCTAGTATGGGTGATTGGGTACACGAGTCCAAGCCAACGCCGGTACTCCAATCACAAAAA GAGGTTAGTAACAGCAATCTACCTTCATCGGAACTCATGCTCCACCTTCAGAATCTTCTTCAGCAGAACTCAAATCAGCAGGATCTCATTGTCAATTTGT TGAATAGCTTGCAACCAGAGGAGGTTCCGGATGCTGTACAAAATGGCAAGTTATTACCTCCATTACCACGCTGCCAGGAGAGTAACGGGAGTGTTGTTGA AGCTACTTCCGAGAGAGAACAGTTATTGATGCGGAAGATCTCCGAGCTTCATTCCAGGATATCCACTTTGACCGATGAACTAAACGCAGAAAGGCTAAAA TCCGAACAACTGCTGCTGAATCCGAGGATCTCTAGACCTGCCGGAAGAGGAGGAGTGCTATTATGCAGGGCGGAGCTTTCTCAGGACGCGCCGTTCGCAG CTGCTATCGGCGCGTGTATGCTGAGTTCGCTGCTATTGCCTGCCGCTACACCGCCTTCTGAAGAGGAATCCGATTCGGGATTGGATACTACTGATGCTCG ATTGGCAGTTATGGGGATCATCAGCTTCGTCCCCTACTTCAATTGGCTGAGCTGGGTGTTTGCTTGGCTGGATACTGGGAAACGCCGCTATGCCGTCTAC GCCCTTGCCTACCTCGCTCCGTACATCAGGTCGAATCTGTCACTTTTTCCGGAGGATTCTTGGCTGCCTATTGCTAGTATTTTCCTCGGCGTCATTCACG TTCAGCTGGAAGCGAGTATTAAGAATGGAGATATTCAAGGATTTCAGCTCTTCAGTGAAGTTTCGAAGCTACTTTCGTTCAGAGAGGAAGAGATCGAGGA CGAGATTACGGATGATGATAGACTGTTCGAGGGGAGGAAGAAAGGACATAGGAATCTGCCATCTGATATTGGCAAGAAGCGTGATGCTAAAAAGAAGCCC TCCTCCGAACACAATGAACGCTCAAATGGCTACTGGGATTAG
AA sequence Show only first row Show all	>Lus10001677 pacid=23154041 polypeptide=Lus10001677 locus=Lus10001677.g ID=Lus10001677.BGIv1.0 annot-version=v1.0 MPVGMGAGQRMHSANPNDYKLLEEVGHGASATVHRAIFLPSNEVVAIKCLDLDRCNSNLDDIRKEAQTMTLIDHPNVIKAFCSFVVDRFLWVVMPFMAEG SCLHLMQIAYTDGFEEAAIRSILKETLKALDYLHCQGHIHRDVKAGNILLDTNGIVKLADFGVSACMFDTGDRQRARNTFVGTPCWMAPEVLQPGSGYDS KADIWSFGITALEMAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTRRPTADKLLKHSFFKHVKPPELSVKKLFADLPPL WNRVKTLQIKDAAQLALKRMPSADQEALSQSEYKRGVSAWNFDIEDLKAQASLVRDDDDTTETKYEDESLKVSGGDKALTNGHTHHVKHDYPSEIPQLER STEASLSESLNQKVKPLDSDILEAGQENLGINRNGSSLELEASTSEKDLMQSKAKVARGRQTQSGPLMPGNGLGRSSFERGRSSERFESEVQPTNETPTR KAPSFSGPLMLQNRTLANSLSAPIKSTGGLRDPLDDKTKTNLVQIKGRFSVTSENLDLAKDVPASAVQRRSSQTSPLRKSASMGDWVHESKPTPVLQSQK EVSNSNLPSSELMLHLQNLLQQNSNQQDLIVNLLNSLQPEEVPDAVQNGKLLPPLPRCQESNGSVVEATSEREQLLMRKISELHSRISTLTDELNAERLK SEQLLLNPRISRPAGRGGVLLCRAELSQDAPFAAAIGACMLSSLLLPAATPPSEEESDSGLDTTDARLAVMGIISFVPYFNWLSWVFAWLDTGKRRYAVY ALAYLAPYIRSNLSLFPEDSWLPIASIFLGVIHVQLEASIKNGDIQGFQLFSEVSKLLSFREEEIEDEITDDDRLFEGRKKGHRNLPSDIGKKRDAKKKP SSEHNERSNGYWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10730			Protein kinase superfamily pro...		Lus10001677 [exp]	0	1
AT1G12930			ARM repeat superfamily protein...		Lus10012590 [exp]	2.8	0.8031
AT5G10630			Translation elongation factor ...		Lus10020153 [exp]	10.9	0.7183
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10022653 [exp]	14.5	0.7004
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035867 [exp]	15.1	0.6695
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10012992 [exp]	18.7	0.6820
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10037719 [exp]	19.0	0.6891
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10016846 [exp]	21.4	0.6728
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10038698 [exp]	24.5	0.6679
AT3G21290			dentin sialophosphoprotein-rel...		Lus10037611 [exp]	25.5	0.6984
AT1G32090			early-responsive to dehydratio...		Lus10002133 [exp]	25.9	0.6904

Compare expression of checked genes

Lus10001677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.