Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80530 648 / 0 Major facilitator superfamily protein (.1) AT4G34950 377 / 2e-124 Major facilitator superfamily protein (.1) AT2G16660 354 / 1e-115 Major facilitator superfamily protein (.1) AT5G14120 347 / 2e-112 Major facilitator superfamily protein (.1) AT3G01930 339 / 2e-109 Major facilitator superfamily protein (.1.2) AT5G50520 315 / 8e-101 Major facilitator superfamily protein (.1) AT5G50630 315 / 8e-101 Major facilitator superfamily protein (.1) AT2G39210 269 / 2e-82 Major facilitator superfamily protein (.1) AT1G74780 266 / 4e-82 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G28120 264 / 1e-80 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017480 [exp] 677 / 0 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 674 / 0 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 665 / 0 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 665 / 0 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10030111 [exp] 399 / 8e-137 AT1G80530 259 / 5e-83 Major facilitator superfamily protein (.1) Lus10025053 [exp] 361 / 3e-118 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 354 / 1e-115 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10032034 [exp] 355 / 2e-115 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035203 [exp] 352 / 4e-114 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G060900 [exp] 854 / 0 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 704 / 0 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 674 / 0 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 375 / 1e-123 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 362 / 1e-118 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 357 / 5e-117 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.012G098900 [exp] 348 / 9e-113 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.017G064201 [exp] 342 / 3e-110 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.001G329100 [exp] 340 / 7e-110 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.008G032901 [exp] 265 / 1e-80 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10001678 pacid=23144370 polypeptide=Lus10001678 locus=Lus10001678.g ID=Lus10001678.BGIv1.0 annot-version=v1.0 ATGCCTATGACTACCCCAGTCAAGGCAGGGATACGGCCACCGTGGGTCGGACTCGGAGCGGCGGTCTGGATCCAAATTGCATCTGGGAATGCCTACACCT TCCCACTCTACTCACATTCCTTAAAATCGGTTCTGGGTTTCAACCAGCAGCAACTCACCATGCTCGGAGTCGCTAATGACATCGGCGAGAATGTCGGACT GATTCCTGGTATTGCCTGCAACTATTTCCCTCCGTGGGTTGTTCTCCTTGTTGGCTCTTTTGCTTGCTTCTTTGGCTATGGCGTCCTCTGGCTCTCCCTT AGCCGCACCGTCGTGTCCTTGCCCTACTGGTTGCTATGGATTTCCCTCTGCGTGGCTACTAACAGCAGTGCATGGTTGAGTACTGCTGTCCTTGTGACTA ACATGAGGAACTTTCCTCTGAGTAGAGGCACAGTCGCTGGTATTCTCAAAGGATATGGAGGGATCAGTGCTGCAGTTTTCACCGAAATTTACACCATCTT GCTCCATGGTTCCTCCTCCAAGCTGCTGATGTTCCTCGCACTCGGAATCCCCATTCTCTGCTTTGCTGCAATGTACTTCGTCAGAGCTTGTACTGAATCC TCCGGTGATAACCCTTGCGAAAATTCTCATTTCCTTTTCATCCAAGGAGTTCTAGTCGTTCTTGGCATATACGTCCTGACAACAACCATACTGGATCACT TGCTTGCTCTGAATCCCGTGGTTTGTTACACATTTCTGGGAATAATGTTTGCCCTCCTCCTTGCTCCTCTAGCTGTTCCAATCAAGATGACAATTGCTCG GGCCAAATCGTTGTCCATCGAGGAGGAGAAAACTGAGCCATTGCTGACGTGGGCATCTTCATCCACAAGCACCATTGAAGGGGACTTTAAGGAATCTGAT TACCGGTCTGAGGTGGCTTTGCTTCTAGCTGAAGGGGAAGGGGCGGTAATGAAGAAGAAGAAGAGGAAGCCTAGAAGAGGTGAGGATTTCAGCTTTAGTG AGGCTGTAGTGAAGGCTGACTTCTGGCTTATTTTCTTTGCTTACTTTGTGGGAGTTGGCTCGGGTGTGACTGTGCTCAACAATCTCGCTCAGATTGGGAT TGCTCAAGGGATGCATGACACCACCATCTTGTTATCACTCTTTAGCTTCTGCAACTTTGCTGGGCGCCTTGGTGGTGGAGCTGTCTCCGAACATTTCGTC AGGTCAAGAACTATCCCTCGAACGCTATGGATGACATGTGCGCAGGCAATGATGGTCGTAACATACCTGCTCTACGCCTCAGCATTAGACGGGACCCTTT ACGTTGCAACTGCATTGCTGGGAGTCTGCTACGGGGTTCAGTTCTCTGTCATGATCCCCACTGTCTCCGAGCTCTTTGGGCTGAAACACTTCGGCATCTT TTACAACTTCATATCGCTTGGAAACCCCATTGGTGCGTTCCTTTTCTCAGGTCTTCTGGCTGCATATTTTTACGACAAGGAGGCAGCCAAGCAGCATGGA TCGAATTCAGTCTACAATTCATCATCAGGGTTCTCTTGCTTAGGTCCAGATTGCTTTAGGCTCACCTTCTTAGTTTTGGCTGGTGCTTCTGGAATTGGCT GGTTCGTGAGTTTCGTCCTAACTCAGAGGATCAAGCCAGTCTATGAGATGCTGTATGCCGGTGGCTCCTTCAGGTTACCTCCTACTTCTGATCAATTGCT TTGA
AA sequence Show only first row Show all	>Lus10001678 pacid=23144370 polypeptide=Lus10001678 locus=Lus10001678.g ID=Lus10001678.BGIv1.0 annot-version=v1.0 MPMTTPVKAGIRPPWVGLGAAVWIQIASGNAYTFPLYSHSLKSVLGFNQQQLTMLGVANDIGENVGLIPGIACNYFPPWVVLLVGSFACFFGYGVLWLSL SRTVVSLPYWLLWISLCVATNSSAWLSTAVLVTNMRNFPLSRGTVAGILKGYGGISAAVFTEIYTILLHGSSSKLLMFLALGIPILCFAAMYFVRACTES SGDNPCENSHFLFIQGVLVVLGIYVLTTTILDHLLALNPVVCYTFLGIMFALLLAPLAVPIKMTIARAKSLSIEEEKTEPLLTWASSSTSTIEGDFKESD YRSEVALLLAEGEGAVMKKKKRKPRRGEDFSFSEAVVKADFWLIFFAYFVGVGSGVTVLNNLAQIGIAQGMHDTTILLSLFSFCNFAGRLGGGAVSEHFV RSRTIPRTLWMTCAQAMMVVTYLLYASALDGTLYVATALLGVCYGVQFSVMIPTVSELFGLKHFGIFYNFISLGNPIGAFLFSGLLAAYFYDKEAAKQHG SNSVYNSSSGFSCLGPDCFRLTFLVLAGASGIGWFVSFVLTQRIKPVYEMLYAGGSFRLPPTSDQLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80530			Major facilitator superfamily ...		Lus10001678 [exp]	0	1
AT1G64600			methyltransferases;copper ion ...		Lus10017309 [exp]	4.9	0.8751
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10026687 [exp]	5.9	0.8856
AT3G16980		NRPE9A, NRPD9A,...	RNA polymerases M/15 Kd subuni...		Lus10037747 [exp]	7.1	0.8573
AT4G36180			Leucine-rich receptor-like pro...		Lus10004266 [exp]	7.9	0.8981
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043478 [exp]	10.3	0.8951
AT3G18600			P-loop containing nucleoside t...		Lus10008989 [exp]	11.0	0.8334
AT5G08780			winged-helix DNA-binding trans...		Lus10002941 [exp]	11.0	0.8636
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10017896 [exp]	13.4	0.8867
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10028054 [exp]	20.0	0.8125
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10027632 [exp]	20.7	0.8944

Compare expression of checked genes

Lus10001678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.