Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G12462 117 / 6e-32 unknown protein AT1G15760 106 / 3e-28 Sterile alpha motif (SAM) domain-containing protein (.1) AT1G80520 104 / 1e-27 Sterile alpha motif (SAM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041687 [exp] 112 / 7e-30 AT1G15760 158 / 1e-48 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10024059 [exp] 109 / 4e-29 AT1G80520 151 / 5e-46 Sterile alpha motif (SAM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G061400 [exp] 180 / 5e-56 AT2G12462 180 / 3e-56 unknown protein Potri.003G012100 [exp] 114 / 5e-31 AT1G15760 204 / 3e-67 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.001G204600 [exp] 112 / 2e-30 AT1G15760 202 / 2e-66 Sterile alpha motif (SAM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [flax] [poplar] SAM PF07647 [flax] [poplar] SAM_2 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Lus10001679 pacid=23144379 polypeptide=Lus10001679 locus=Lus10001679.g ID=Lus10001679.BGIv1.0 annot-version=v1.0 ATGGACTGGTTCTCATGGCTATCAAAGTCCACCCTCGACCCATCCCTCGTCTGCGACTACAGCCTCACCTTCCAGCAGAACGAGCTCCAATTCGATGATT TGTCCTACTTCAACCACGAATTCCTCCAGAGCATGGGCATCTCTGTCGCTAGACACCGCCTCGAAATCCTCAAGCTAGCCTCCAAAGAAACCTGCCCAAC CAAAACTCGCTCCGGTGGTGGAATTCTCGGTTTCGTCAAGGCCATCGGCCGAACCAAGCAGAGCATCAAGAAGCGCATTGCCAAATTCGTCTCCTCTGGA GAAGGCGGAGGAGGATGCCGACGGCCTACTCCTCTTCCCGAGCTGGAGTGGAAGCCAGCAACAGCCACAGCCACAGGCTCCACCCCTGCTGTAGCGAGAA CACCGCCACCGCGGCCGTTGCTTCCTGTTGTCAAGCGGAGGCAGGCGAAATCTGGACCGTTGGAGTTCAAGAGGGTTCAGCAGGAGAGCTTGGTTTTCTC CAAGTCCAAGAGTAGTCTCAAGCTCTCCGGGCCGTTGGATATGAAGGCGCACGAGAGATTGGTGTTCAGTTACAAGAGTCCCCAAATCTGCGAGACGAGC CCACGGGTGGGGGTGGGTAGGCCCATTGATATGAGGCGGACGAGCCCAATGGTAAGGAGTGGGAGTGGGACGCCCATAGGTGGTATGAATGGTGTAGACT TTGACGAGCATTCACTCTGGACTGCACTTTTCCAGGACATGAAACCCACTTGA
AA sequence Show only first row Show all	>Lus10001679 pacid=23144379 polypeptide=Lus10001679 locus=Lus10001679.g ID=Lus10001679.BGIv1.0 annot-version=v1.0 MDWFSWLSKSTLDPSLVCDYSLTFQQNELQFDDLSYFNHEFLQSMGISVARHRLEILKLASKETCPTKTRSGGGILGFVKAIGRTKQSIKKRIAKFVSSG EGGGGCRRPTPLPELEWKPATATATGSTPAVARTPPPRPLLPVVKRRQAKSGPLEFKRVQQESLVFSKSKSSLKLSGPLDMKAHERLVFSYKSPQICETS PRVGVGRPIDMRRTSPMVRSGSGTPIGGMNGVDFDEHSLWTALFQDMKPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G12462			unknown protein		Lus10001679 [exp]	0	1
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10041419 [exp]	2.4	0.7893
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040463 [exp]	14.5	0.7314
AT5G39410			Saccharopine dehydrogenase (....		Lus10032995 [exp]	24.5	0.7396
AT1G71970			unknown protein		Lus10009418 [exp]	30.3	0.7668
AT2G34590			Transketolase family protein (...		Lus10038505 [exp]	30.4	0.7611
AT3G16200			unknown protein		Lus10037579 [exp]	32.2	0.7661
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10017217 [exp]	37.5	0.7331
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10037770 [exp]	53.0	0.7476
AT2G24230			Leucine-rich repeat protein ki...		Lus10036608 [exp]	53.7	0.6930
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10002385 [exp]	76.8	0.7198

Compare expression of checked genes

Lus10001679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.