Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25620 361 / 6e-123 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT2G33700 290 / 3e-95 Protein phosphatase 2C family protein (.1) AT3G51470 287 / 2e-94 Protein phosphatase 2C family protein (.1) AT3G62260 254 / 3e-81 Protein phosphatase 2C family protein (.1.2) AT1G48040 251 / 5e-80 Protein phosphatase 2C family protein (.1) AT3G17250 218 / 7e-67 Protein phosphatase 2C family protein (.1) AT5G10740 145 / 4e-40 Protein phosphatase 2C family protein (.1) AT1G07160 142 / 2e-38 Protein phosphatase 2C family protein (.1) AT5G24940 142 / 3e-38 Protein phosphatase 2C family protein (.1) AT2G30020 137 / 2e-36 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030115 [exp] 370 / 2e-127 AT2G25620 234 / 1e-74 DNA-binding protein phosphatase 1 (.1) Lus10013124 [exp] 340 / 6e-115 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10008091 [exp] 338 / 4e-114 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10016030 [exp] 293 / 4e-96 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10030731 [exp] 291 / 9e-96 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 289 / 1e-94 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 280 / 1e-90 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10009993 [exp] 256 / 4e-82 AT3G62260 446 / 1e-156 Protein phosphatase 2C family protein (.1.2) Lus10038058 [exp] 249 / 2e-79 AT3G62260 442 / 4e-155 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G059600 [exp] 509 / 0 AT2G25620 375 / 9e-129 DNA-binding protein phosphatase 1 (.1) Potri.018G115100 [exp] 476 / 7e-169 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.018G033000 [exp] 338 / 2e-114 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G248400 [exp] 336 / 2e-113 AT2G25620 478 / 5e-169 DNA-binding protein phosphatase 1 (.1) Potri.005G253700 [exp] 293 / 2e-96 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 283 / 1e-92 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 282 / 2e-92 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 281 / 1e-91 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 276 / 8e-90 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.002G190400 [exp] 253 / 1e-80 AT3G62260 436 / 6e-153 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10001682 pacid=23144377 polypeptide=Lus10001682 locus=Lus10001682.g ID=Lus10001682.BGIv1.0 annot-version=v1.0 ATGTGTGTTCAGGATGCAGACAACGTAGTTACCCAGGAAGCACAAATCGAGAACAACGGTTTCGACGGCGGCAGTGGCGGAAGCAACGGCAACAAGAAGC AAGTTCGGCAGTTGAATTGTGGGGCGGTCAGGAATACCCAGATGGAGAATTGGGATAAAGACTCTTCCTTTTTGGTACCTGATGGAGGAATCACCGTCGG CAACTCCTTTCCTCTGGAGAGCATTAGTGAGGATAGAGTCTCAGCAAATTTTGTTCCTGCTCTTCGCTGTGGAGAGTGGTCTGATATTGGCGGCCGCTCT GAAATGGAGGACACCTTTGTTTGTATTAGTGACTTGGCTAAGAAGTTTGGCAGTGATTTGCTGAATAAGGAAGCCATCTCTTTATACGGAGTATTTGATG GACATGGGGGGAAGAGTGCAGCACAATTTGTCCGAGACCATCTGCCAAGGATCATTGTTGAAGATGCTGATTTCCCTCTTGAACTTGAGAAGGTGGTTAC ACGTTCATTCATCGAAGCTGATGCTGCATTTGCAAAATCGTGCTCTGCTGGCTCCTTAACCTCTTCTGGGACAACTGCACTCACTGCCATGATTTTTGGG AGGTCGATGCTTGTGGCAAATGCAGGGGACTGCAGGGCAGTACTGTCAAGAAATGGAATGGCAATCGAGATGTCAACTGATCACAGGCCTTGCAGCATTA GAGAAAGGTCACGAGTCGAGTCATTAGGAGGCTATGTTGATGATGGTTATCTGAACGGTCAGCTGGGGGTTACTCGTGCATTAGGCGATTGGCACCTCGA AGGGATGAAGGAAGACACGGAGGGTAAAAGTGGGGGAGGAGGAGGTCCCTTGATTGCTGAGCCGGAACTCAAGCTGATTACACTGACCCGGGATGATGAG TTTCTAATCATAGGTTGTGATGGGATATGGGACGTGTTCTCGAGCCAGAATGCAGTGCATTTTGCGAGGAGGAGACTCCAACAACACAATGATGTGAAGC AATGCTGCAGAGAAGTGGTGGAGGAAGCTATAAAGCGAGGAGCGATTGATAACTTGACAGTGGTTATGGTGAGTTTTCACATGGAGGCTCCACCACCATC TACAGTAGTTGAGAGGGGAAGAGTGAGGAGGAGCATCTCTGCTGAGGGATTGCAGAACCTCAAATGTCTGCTTCAAGAATAA
AA sequence Show only first row Show all	>Lus10001682 pacid=23144377 polypeptide=Lus10001682 locus=Lus10001682.g ID=Lus10001682.BGIv1.0 annot-version=v1.0 MCVQDADNVVTQEAQIENNGFDGGSGGSNGNKKQVRQLNCGAVRNTQMENWDKDSSFLVPDGGITVGNSFPLESISEDRVSANFVPALRCGEWSDIGGRS EMEDTFVCISDLAKKFGSDLLNKEAISLYGVFDGHGGKSAAQFVRDHLPRIIVEDADFPLELEKVVTRSFIEADAAFAKSCSAGSLTSSGTTALTAMIFG RSMLVANAGDCRAVLSRNGMAIEMSTDHRPCSIRERSRVESLGGYVDDGYLNGQLGVTRALGDWHLEGMKEDTEGKSGGGGGPLIAEPELKLITLTRDDE FLIIGCDGIWDVFSSQNAVHFARRRLQQHNDVKQCCREVVEEAIKRGAIDNLTVVMVSFHMEAPPPSTVVERGRVRRSISAEGLQNLKCLLQE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10001682 [exp]	0	1
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	1.4	0.8978
AT3G10120			unknown protein		Lus10021358 [exp]	2.8	0.8702
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10009153 [exp]	3.3	0.8601
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10017510 [exp]	4.0	0.8864
AT1G49740			PLC-like phosphodiesterases su...		Lus10014072 [exp]	5.0	0.8371
AT5G65660			hydroxyproline-rich glycoprote...		Lus10042927 [exp]	7.1	0.8609
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10008631 [exp]	7.7	0.8455
AT3G56360			unknown protein		Lus10029031 [exp]	9.2	0.8313
AT5G19070			SNARE associated Golgi protein...		Lus10034028 [exp]	9.8	0.8453
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10041451 [exp]	11.4	0.8745

Compare expression of checked genes

Lus10001682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.