Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45290 157 / 7e-42 RING/U-box superfamily protein (.1.2) AT4G09560 77 / 5e-15 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G22670 75 / 3e-14 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G71980 73 / 1e-13 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G22500 72 / 2e-13 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT1G72200 72 / 3e-13 RING/U-box superfamily protein (.1) AT1G35625 68 / 6e-13 RING/U-box superfamily protein (.1) AT2G17730 69 / 7e-13 NIP2 NEP-interacting protein 2 (.1.2) AT4G35840 68 / 8e-13 RING/U-box superfamily protein (.1) AT5G17600 68 / 3e-12 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030117 [exp] 861 / 0 AT5G45290 155 / 5e-41 RING/U-box superfamily protein (.1.2) Lus10035680 [exp] 134 / 7e-34 AT5G45290 343 / 1e-111 RING/U-box superfamily protein (.1.2) Lus10013618 [exp] 84 / 2e-17 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10031515 [exp] 72 / 2e-13 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10043426 [exp] 70 / 2e-13 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1) Lus10034157 [exp] 70 / 3e-13 AT4G40070 84 / 7e-19 RING/U-box superfamily protein (.1) Lus10037264 [exp] 71 / 6e-13 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1) Lus10006074 [exp] 71 / 6e-13 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10001568 [exp] 70 / 6e-13 AT3G55530 361 / 9e-127 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G190500 [exp] 449 / 1e-153 AT5G45290 150 / 3e-39 RING/U-box superfamily protein (.1.2) Potri.018G114700 [exp] 417 / 1e-140 AT5G45290 131 / 2e-32 RING/U-box superfamily protein (.1.2) Potri.014G053500 [exp] 274 / 2e-86 AT5G45290 134 / 4e-34 RING/U-box superfamily protein (.1.2) Potri.002G140500 [exp] 272 / 1e-85 AT5G45290 119 / 1e-28 RING/U-box superfamily protein (.1.2) Potri.001G127100 [exp] 166 / 5e-45 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2) Potri.003G106600 [exp] 160 / 9e-43 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2) Potri.019G010500 [exp] 72 / 3e-14 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 71 / 5e-14 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 73 / 9e-14 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 73 / 1e-13 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10001683 pacid=23144369 polypeptide=Lus10001683 locus=Lus10001683.g ID=Lus10001683.BGIv1.0 annot-version=v1.0 ATGGAAGATCGTCCTTATGAAATGTTGATGAGTTCTGTACAAAATTCTGATCCACTGAGAAGCAAATTTGAAATCCCAATACATGAATCTTCTACGAATA TTGGTGCAGAAGTAGTGCCTGAAAATTCTGATGGTGTGATTGGTCACTCATCCACAGCAAGAATTGCATCCAACAAGAGAAGAGTTGGTGACAGTGGATT GGGTAACATGGGAACAAATAATCAGGAGAGACGTTTCTCTGAGAGTTTGGAGTTTGTCTCTTCTCGGGTAAGTGATGAATATAGCTTCAACGATTCTTTT AGGAATAGGTATAGTGGTGAAGCTAGTAGTTCATTTAGAGAACAACAATCTTCAAGTCCTCCTTCTTTAAATAATTTGGCTAACAATGATTCAGTCAATG GTATGGAAAATCTAGACAATTGTGATGTTCGTCAGGCGGTTGTATATGCAGAAAGCTCACCGCAAGGGCTGCAAGCATCAACTTTTGACAGAGTTTCTGT TAACAATTACATGGATGAAATGTCAACTTGGTCTCTGCATGATTCTGATTCTGGTAGCCATAGTGTTGAAGTTCGACCTGTATCAAGCTCACTAGGAGAT GAAACTTTGCAAGAAGCAGCTCCTGAGGATTTAGGACTTGTTGTAAGTGAACATGTGCAGGATGATAGTGATGTCCTTCATGTAGATGTTGTAAGCATTT CCTCGAGCATCTTTTCTAGAAACAATGCTGATACAACTAGTTATGAAGCTAGACGAAACAGTAGAAGACTTTTCTGGGATGCATTTTCCAGACGCAGTTC CTGGAGGCCTATTGATCCTCCAACTGTTGCTTTATCGACAGAGAGTAATGACGATTTGGCATCTCATGATAGATGGCTCCTTGATTTTAGTGGTGACTTA CACAATGATGGTGTTAGTAGCGATGCTGGATACCTTGGAAGCAGGATCCGTAGCTGGAATGACCGGAGGCGTCACTCAAGATCAGAGATTTGGGAGAGGC TTGTAGGAAATCTTGATGAGAACGAGCGAAGAACAACCTTATGTCCTTCTGGACTTCACCCTGACGGTACTTGTTTTTGTGAATCACTCTTGACGAGCGG GGAGTCTAGTACTCGTGCAAGTATATCACGGATAGTCATGCTTGCTGAAGCCCTTTTTGAGGTGTTGGATGAAATTCATCGGCAGCCTTCTTCACTTTCC CTATCAATGGTTGCTCTCCCAGCCCCGGAATCTGTGGTCGACTCTTTTCCTCTTAAGAATCACAAAAAGGACGACAATATTGAAGTTGGGGATGAAGTTG ATCAGTGCTACATCTGTCTTTCCGAGTATGAAGAAGGGGATAAAATAAGAGTACTTCCTTGCCACCATGAGTATCACATGTCTTGTGTTGATAAATGGCT TAAAGAGATACACGGCGTCTGCCCACTTTGTCGGGGAGATGTTCGCCAGGGCGCCACCGAGCCATCGTCTACTCGCACCTCTGAGATTCCTTCACTCTGA
AA sequence Show only first row Show all	>Lus10001683 pacid=23144369 polypeptide=Lus10001683 locus=Lus10001683.g ID=Lus10001683.BGIv1.0 annot-version=v1.0 MEDRPYEMLMSSVQNSDPLRSKFEIPIHESSTNIGAEVVPENSDGVIGHSSTARIASNKRRVGDSGLGNMGTNNQERRFSESLEFVSSRVSDEYSFNDSF RNRYSGEASSSFREQQSSSPPSLNNLANNDSVNGMENLDNCDVRQAVVYAESSPQGLQASTFDRVSVNNYMDEMSTWSLHDSDSGSHSVEVRPVSSSLGD ETLQEAAPEDLGLVVSEHVQDDSDVLHVDVVSISSSIFSRNNADTTSYEARRNSRRLFWDAFSRRSSWRPIDPPTVALSTESNDDLASHDRWLLDFSGDL HNDGVSSDAGYLGSRIRSWNDRRRHSRSEIWERLVGNLDENERRTTLCPSGLHPDGTCFCESLLTSGESSTRASISRIVMLAEALFEVLDEIHRQPSSLS LSMVALPAPESVVDSFPLKNHKKDDNIEVGDEVDQCYICLSEYEEGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRQGATEPSSTRTSEIPSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45290			RING/U-box superfamily protein...		Lus10001683 [exp]	0	1
AT4G03115			Mitochondrial substrate carrie...		Lus10009777 [exp]	17.3	0.7514
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10007763 [exp]	20.6	0.6887
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10001406 [exp]	26.6	0.7388
AT4G15475			F-box/RNI-like superfamily pro...		Lus10012764 [exp]	27.2	0.7456
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10043105 [exp]	46.7	0.7367
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	57.5	0.7153
AT1G47570			RING/U-box superfamily protein...		Lus10033472 [exp]	61.7	0.7285
					Lus10037718 [exp]	65.4	0.6287
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10019782 [exp]	66.5	0.6277
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	67.1	0.6982

Compare expression of checked genes

Lus10001683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.