Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030118 [exp] 855 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G114600 [exp] 572 / 0 ND / Potri.006G190400 [exp] 528 / 0 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001684 pacid=23144371 polypeptide=Lus10001684 locus=Lus10001684.g ID=Lus10001684.BGIv1.0 annot-version=v1.0 ATGGCGTACAAGTACACTCCAGCATACTACTCAACCCTCCACGATTCTATCACCTCCCTCTGCAAGAACGTCCTCCCTTTCTCCTTTAAGAAGCGTCGTC TGGCCGCCACTGAACACCGCCTTGCAAAGCTACAGTCCGACAACCTCAAATGGCAGCAAGATTCCTACCACCAGATCCTCAATTTGATGGGTCTTCACAG AGAAGGAATCTTGGCCGAACATGAAGTCTCCACTTTTCGAACCCATTTGCTGGAAACCCTTGTCGCTTCTCCGCCTGAAATTGAGCATTCCGTCATCTTG AGAGACAAACTGCTCTTCTTGCAGGAGTTGCTTTACGCTAAATGCATAACTGAGGAGGAGTACCATTCGTCGAAGAGGCCATTACTGCAGAGAATGGCAG TTCAAGGAGCCGAGATTGAGTCCAGAGATGTGATCGTTGGTACCAATCAAAACAAGGCAAAGGAGGACGAGGAGAACAGAGACGAAGAATGGTCGGTTAT CGACTTGAAAGATGAGAAATGTTTGTCTGCTAAAGAAAAGACTCCCCTATCTAAGAGCAAACCAAGCTCGTCTTCAATGATAAAGCAGCAGATCAAAGGA GCTGCTACGATGTTCGGCTTCCACAACAGCAGCAGCAGGAGGCAGAGCATATTCGAGATTGAGGCGAATCGATCGTCCTGCGAAACAGAGGAGGTCGTCA AAATCTCGGTTGAGAATGGCGAAACGAAATCAATCTTGATGCAAGGAAGCAGCTTGCAGACTGAATCCGCGAGGAAGAAGAAGGATAATGGCAGCAGTGA GAAGGCAAAAAGGAAGCCCTTCGGGACTCTGTTTCACCATAAAGAAGAGAGTGGGGGAGCAGGAACAAATTCTGCAAAGAAGAAGCAGTGGGGACTGAAA TGGAAGAGGAATAATTCAGAAGAAGATGAAACATCTCCTTTGCCGCTTAACTTTGAAAGATTAGATGACGATGACGATGGTGGTTATAGCAACCTAGTTA CCAGCCCGATTGGAGAAGGTCCTGATACAAAACAGATCAAAAGGAAACTTCATTCTAATGGCACTCCTTCAGACTTCTTCATCGACAAGGTTTTGGGGAA TAACATAAAGAAAGAGCTTTCAAGGATTCAAACAGAACTCTCCACCACTAACCCTAATCTGAAATTCTCAGAGGATCAAATTGAAGCAATCTCCACCAAG CTTCCTGTTGACAAGTCTGACCTCAACAATTTCTTTCCCAAGTCATGGTGCGATCGATATGGAGAAGTGGTGCTGGATGTGGTGAAGAAAGAGTTCAAGG ATCATGTCAGTGAGATGGAGAACATGAGGAATGCTAACAGGGAGAAAAATTTAAACAACTCAAAGAGATGGACAACGTTTGACGAGGACGATGATGAGAA TAGCCACCCGAATCACAACAACAATAACAACCCTTTCCTTCATGATTGTAGCAGCAACAAACATGGCAATGATCCAAGAGCTGTATCATCTTCTTTCCAG AATCCTTTCTGGAATGCTGCTTCTCACTAG
AA sequence Show only first row Show all	>Lus10001684 pacid=23144371 polypeptide=Lus10001684 locus=Lus10001684.g ID=Lus10001684.BGIv1.0 annot-version=v1.0 MAYKYTPAYYSTLHDSITSLCKNVLPFSFKKRRLAATEHRLAKLQSDNLKWQQDSYHQILNLMGLHREGILAEHEVSTFRTHLLETLVASPPEIEHSVIL RDKLLFLQELLYAKCITEEEYHSSKRPLLQRMAVQGAEIESRDVIVGTNQNKAKEDEENRDEEWSVIDLKDEKCLSAKEKTPLSKSKPSSSSMIKQQIKG AATMFGFHNSSSRRQSIFEIEANRSSCETEEVVKISVENGETKSILMQGSSLQTESARKKKDNGSSEKAKRKPFGTLFHHKEESGGAGTNSAKKKQWGLK WKRNNSEEDETSPLPLNFERLDDDDDGGYSNLVTSPIGEGPDTKQIKRKLHSNGTPSDFFIDKVLGNNIKKELSRIQTELSTTNPNLKFSEDQIEAISTK LPVDKSDLNNFFPKSWCDRYGEVVLDVVKKEFKDHVSEMENMRNANREKNLNNSKRWTTFDEDDDENSHPNHNNNNNPFLHDCSSNKHGNDPRAVSSSFQ NPFWNAASH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001684 [exp]	0	1
AT3G26050			TPX2 (targeting protein for Xk...		Lus10037054 [exp]	1.4	0.9744
					Lus10030118 [exp]	1.7	0.9687
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10017715 [exp]	5.3	0.9736
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10021988 [exp]	5.9	0.9647
AT2G42110			unknown protein		Lus10016261 [exp]	6.4	0.9398
AT5G12360			unknown protein		Lus10039048 [exp]	6.9	0.9589
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041887 [exp]	7.5	0.9681
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10040282 [exp]	9.2	0.9642
AT2G37420			ATP binding microtubule motor ...		Lus10024429 [exp]	9.9	0.9636
AT4G02800			unknown protein		Lus10022037 [exp]	11.0	0.9549

Compare expression of checked genes

Lus10001684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.