Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15580 130 / 6e-38 RING/U-box superfamily protein (.1.2) AT3G13430 58 / 6e-10 RING/U-box superfamily protein (.1.2.3) AT5G56340 57 / 1e-09 ATCRT1 RING/U-box superfamily protein (.1) AT1G55530 57 / 1e-09 RING/U-box superfamily protein (.1) AT1G49850 56 / 3e-09 RING/U-box superfamily protein (.1) AT2G40830 56 / 3e-09 RHC1A RING-H2 finger C1A (.1.2.3) AT3G58720 55 / 5e-09 RING/U-box superfamily protein (.1.2) AT3G19950 54 / 1e-08 RING/U-box superfamily protein (.1) AT4G26400 54 / 1e-08 RING/U-box superfamily protein (.1.2) AT2G29840 54 / 2e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030120 [exp] 340 / 1e-120 AT2G15580 139 / 2e-41 RING/U-box superfamily protein (.1.2) Lus10001688 [exp] 81 / 2e-19 AT2G15580 76 / 2e-18 RING/U-box superfamily protein (.1.2) Lus10013397 [exp] 56 / 4e-09 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10002369 [exp] 54 / 1e-08 AT3G47990 252 / 1e-83 SUGAR-INSENSITIVE 3 (.1) Lus10002113 [exp] 54 / 1e-08 AT1G49850 133 / 2e-37 RING/U-box superfamily protein (.1) Lus10017788 [exp] 53 / 1e-08 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3) Lus10001582 [exp] 53 / 1e-08 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10025612 [exp] 54 / 2e-08 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10001611 [exp] 54 / 2e-08 AT1G68180 156 / 2e-46 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G190300 [exp] 169 / 6e-53 AT2G15580 170 / 2e-53 RING/U-box superfamily protein (.1.2) Potri.018G114500 [exp] 168 / 6e-53 AT2G15580 161 / 3e-50 RING/U-box superfamily protein (.1.2) Potri.003G223200 [exp] 57 / 2e-09 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 56 / 2e-09 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.009G091200 [exp] 56 / 3e-09 AT1G49850 108 / 3e-28 RING/U-box superfamily protein (.1) Potri.014G139400 [exp] 54 / 1e-08 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2) Potri.019G032500 [exp] 54 / 1e-08 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.002G085800 [exp] 54 / 1e-08 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1) Potri.001G297000 [exp] 54 / 2e-08 AT1G49850 107 / 2e-27 RING/U-box superfamily protein (.1) Potri.015G074900 [exp] 53 / 4e-08 AT3G47990 506 / 0.0 SUGAR-INSENSITIVE 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10001685 pacid=23144375 polypeptide=Lus10001685 locus=Lus10001685.g ID=Lus10001685.BGIv1.0 annot-version=v1.0 ATGGCGGGAATATTGCCCGGCGTGGAATGTGCCCGGAGGAGAAGGTTACATCAAGGCGGCGGCAATTCCTCCGAAAACGGTGGCGGAGGAAGGAGGCCCA CCTTATGTTTGTACACAAGCAACCACGATAATGGCAGCTCACATAGTTCAATGAACACCACCACTACTTTGCAGAGAAGCACACAAAATCAGAATCTGGG AGGAGTGGCCAGACAAGCCAAGGAAAGACTGGACGAGAAACTTAGATTACAAAGGAATTTCTTTGATTCCAAATCCAAACGACAAAACACGAGTTCGGGG ACATTGAGGATAGTGGATGCCAGAACAATGGAACCGTTAGGAGAATTACAGACAGATGTGTTGAGAGCAAAATCGTGGAAGTGGGGGATGATGAAATTGA GATGGAAGACTAATAGTAGTAGTAGTAGTGGTAATGGTGAGCAAGAAGAGTGCCCTATTTGCATAGATGCTTTCAAGGTTGAAAAGCAAGTGGTTCGCCT TCTATGTGCCCACAAGTTCCATACCAAGTGCTTGCTTCCTTGGCTCCTTACCAATACCCATTGCCCTTGTTGCCGAATGGTAATTCACATTGAAATCCCA TCTTCTTCATAG
AA sequence Show only first row Show all	>Lus10001685 pacid=23144375 polypeptide=Lus10001685 locus=Lus10001685.g ID=Lus10001685.BGIv1.0 annot-version=v1.0 MAGILPGVECARRRRLHQGGGNSSENGGGGRRPTLCLYTSNHDNGSSHSSMNTTTTLQRSTQNQNLGGVARQAKERLDEKLRLQRNFFDSKSKRQNTSSG TLRIVDARTMEPLGELQTDVLRAKSWKWGMMKLRWKTNSSSSSGNGEQEECPICIDAFKVEKQVVRLLCAHKFHTKCLLPWLLTNTHCPCCRMVIHIEIP SSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15580			RING/U-box superfamily protein...		Lus10001685 [exp]	0	1
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10026327 [exp]	11.8	0.8233
AT3G02750			Protein phosphatase 2C family ...		Lus10021486 [exp]	13.8	0.8441
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10012811 [exp]	15.8	0.8567
AT1G18010			Major facilitator superfamily ...		Lus10020560 [exp]	31.1	0.8154
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10018686 [exp]	32.2	0.8137
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10039821 [exp]	38.6	0.8146
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019177 [exp]	40.1	0.8023
AT5G49350			Glycine-rich protein family (....		Lus10037727 [exp]	44.8	0.7411
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10007737 [exp]	50.0	0.7768
AT1G05675			UDP-Glycosyltransferase superf...		Lus10039041 [exp]	67.8	0.7637

Compare expression of checked genes

Lus10001685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.