Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG01310 244 / 2e-81 ATCG01310.1, RPL2.2 ribosomal protein L2 (.1) ATCG00830 244 / 2e-81 ATCG00830.1, RPL2.1 ribosomal protein L2 (.1) AT2G44065 90 / 5e-22 Ribosomal protein L2 family (.1.2) AT3G51190 63 / 9e-12 Ribosomal protein L2 family (.1) AT4G36130 60 / 1e-10 Ribosomal protein L2 family (.1) AT2G18020 57 / 1e-09 EMB2296 embryo defective 2296, Ribosomal protein L2 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001572 [exp] 97 / 1e-24 AT2G44065 238 / 8e-80 Ribosomal protein L2 family (.1.2) Lus10004973 [exp] 99 / 8e-24 AT1G07510 815 / 0.0 FTSH protease 10 (.1) Lus10025966 [exp] 59 / 3e-10 AT4G36130 499 / 0.0 Ribosomal protein L2 family (.1) Lus10041923 [exp] 59 / 3e-10 AT4G36130 502 / 0.0 Ribosomal protein L2 family (.1) Lus10028468 [exp] 59 / 4e-10 AT4G36130 495 / 4e-180 Ribosomal protein L2 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G137077 [exp] 239 / 2e-81 ATCG01310 243 / 2e-82 ribosomal protein L2 (.1) Potri.011G074401 [exp] 199 / 7e-63 ATCG01310 376 / 2e-131 ribosomal protein L2 (.1) Potri.017G007700 [exp] 93 / 4e-23 AT2G44065 200 / 3e-65 Ribosomal protein L2 family (.1.2) Potri.007G142200 [exp] 92 / 8e-23 AT2G44065 197 / 4e-64 Ribosomal protein L2 family (.1.2) Potri.007G013101 [exp] 58 / 6e-10 AT4G36130 493 / 3e-179 Ribosomal protein L2 family (.1) Potri.007G013000 [exp] 58 / 6e-10 AT4G36130 493 / 3e-179 Ribosomal protein L2 family (.1) Potri.005G115700 [exp] 58 / 6e-10 AT4G36130 492 / 5e-179 Ribosomal protein L2 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF03947 [flax] [poplar] Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001687 pacid=23144378 polypeptide=Lus10001687 locus=Lus10001687.g ID=Lus10001687.BGIv1.0 annot-version=v1.0 ATGGAGAAGACAAAATTGTTTCAAGCACTGCCAGAACCCGAAGCGCCCCTTGTTTCATTTCAAAGAGAGGAGGACGGGTTATTCACATTTCATTTGATGG TCAGAGGCGAATTGAAAGCTAAACAGTGGCTCGATCTGTATAGATATCAGCTACATCCGGAAAGCCGTATGCTTTGGGAAGAAGCTTGTACAGTTTGGGA AGAGGTTTTAATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGAACCGCCATACATAACATAGAAATCACACTTGGAAAGGGTGGGCAA GTAGCTAGAGCTGCCGGTGCTGTAGCGAAACTTATTGCAAAAGAGGGCAAGTCGGCCACATTAAAATTACCTTCGGGTGAGGTGCGTTTAATATCCCAAA ACTGCTCAGCAACAGTGGGGCAAGTAGGCAATGTTGGGGCGAACCGGAAAAGTTTGGGTAGAGCCGGATCGAAATGTTGGCTAGGTAAGCGTCCTGTAGT AAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGGGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCT GCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGCGATAATTTAATTCTTCGTCGTCGTAGTAAATAG
AA sequence Show only first row Show all	>Lus10001687 pacid=23144378 polypeptide=Lus10001687 locus=Lus10001687.g ID=Lus10001687.BGIv1.0 annot-version=v1.0 MEKTKLFQALPEPEAPLVSFQREEDGLFTFHLMVRGELKAKQWLDLYRYQLHPESRMLWEEACTVWEEVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQ VARAAGAVAKLIAKEGKSATLKLPSGEVRLISQNCSATVGQVGNVGANRKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYP ALGRRSRKRNKYSDNLILRRRSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
ATCG00830		ATCG00830.1, RP...	ribosomal protein L2 (.1)		Lus10001687 [exp]	0	1
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Lus10009499 [exp]	1.0	0.9864
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Lus10013628 [exp]	1.4	0.9757
ATCG00670		PCLPP, ATCG0067...	CASEINOLYTIC PROTEASE P 1, pla...		Lus10006595 [exp]	1.7	0.9612
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042232 [exp]	6.5	0.9222
ATCG00500		ATCG00500.1, AC...	acetyl-CoA carboxylase carboxy...		Lus10002473 [exp]	7.5	0.9167
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026991 [exp]	8.2	0.9272
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10026424 [exp]	8.4	0.9204
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001331 [exp]	8.7	0.9231
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10004897 [exp]	10.8	0.9032
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10039916 [exp]	14.3	0.8268

Compare expression of checked genes

Lus10001687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.