Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13825 65 / 2e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000042 [exp] 181 / 9e-61 AT5G13825 66 / 4e-15 unknown protein Lus10005167 [exp] 158 / 4e-51 AT5G13825 69 / 5e-16 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001690 pacid=23171905 polypeptide=Lus10001690 locus=Lus10001690.g ID=Lus10001690.BGIv1.0 annot-version=v1.0 ATGGAGCAGCAGGTTAAGGCAGCAGCAAGTGCACCTCAGCAGCAGCAGCCACAGGAGCAGCAGCAGCCCAGAAACAGGATCCATGGGCGACGGCCGCCAA AGCATAGGAGGATGCCGGCGCCGAAGACGGTAGCGGTGGGCATAATAGAACAGGTGATTCGGAGAAGGAGAAACCGTCCTGGGACAACTTCCTACTACTA TGACAACAATACCCCTGTTTTTGGCTGGCTTCTCCGCGGTTGGGTTGTTGAAGAGAGAACCGTCCCCAATGGACGAGTTTATCGATATTACTATGATCCG TTTGGGCAGATGTATATGTCCAAAGCTGAAGTACTTGTGACATGGGAGCAGCAGGCTGGTATCATTCTCGTACATTAG
AA sequence Show only first row Show all	>Lus10001690 pacid=23171905 polypeptide=Lus10001690 locus=Lus10001690.g ID=Lus10001690.BGIv1.0 annot-version=v1.0 MEQQVKAAASAPQQQQPQEQQQPRNRIHGRRPPKHRRMPAPKTVAVGIIEQVIRRRRNRPGTTSYYYDNNTPVFGWLLRGWVVEERTVPNGRVYRYYYDP FGQMYMSKAEVLVTWEQQAGIILVH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13825			unknown protein		Lus10001690 [exp]	0	1
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10002995 [exp]	4.2	0.8754
					Lus10005609 [exp]	5.0	0.9104
AT5G03795			Exostosin family protein (.1)		Lus10013790 [exp]	6.6	0.8675
					Lus10024552 [exp]	8.0	0.9058
AT1G34630			unknown protein		Lus10043395 [exp]	8.2	0.8075
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10021707 [exp]	8.8	0.9004
AT5G05340			Peroxidase superfamily protein...		Lus10009932 [exp]	9.3	0.8302
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10031589 [exp]	10.3	0.7448
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10002389 [exp]	11.8	0.8876
					Lus10027664 [exp]	12.4	0.8860

Compare expression of checked genes

Lus10001690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.