Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39630 469 / 4e-167 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) AT1G20575 50 / 8e-07 DPMS1 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023414 [exp] 540 / 0 AT2G39630 504 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10040296 [exp] 517 / 0 AT2G39630 476 / 3e-170 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10005164 [exp] 501 / 2e-176 AT2G39630 387 / 2e-131 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10013228 [exp] 50 / 1e-06 AT1G20575 450 / 1e-162 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10030748 [exp] 49 / 1e-06 AT1G20575 450 / 9e-163 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G204000 [exp] 532 / 0 AT2G39630 509 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.008G055700 [exp] 527 / 0 AT2G39630 499 / 5e-179 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.002G010300 [exp] 52 / 1e-07 AT1G20575 452 / 1e-163 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G250900 [exp] 52 / 2e-07 AT1G20575 447 / 6e-162 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00535 [flax] [poplar] Glycos_transf_2 Glycosyl transferase family 2
Representative CDS sequence Show only first row Show all	>Lus10001691 pacid=23171912 polypeptide=Lus10001691 locus=Lus10001691.g ID=Lus10001691.BGIv1.0 annot-version=v1.0 ATGGAGCTTCTATGGAAGATTGCAGAGCAGTTCTTCGCTCTAATTTTAATTGTTGGTTTGCTGTTACTCTCCGCAATGATCTTCGAAGCCTACCGAAGAA GAAACAACAAGCACATTGATCATCCTGCTTATTTCGAGGATCCGAATTCCCTGAAACAGATTCCATGTCCGCAGCTAATAGATCCTGCTGAAAAGTACAT ATCGTTGATCATTCCTGCATTCAATGAAGAGCACAGGCTTCCTGCAGCTCTTGATGAAACAATTAAGAAACTCGAGTGGCGTAATTATCTTTTGTATTAC ATGAACGATGACACTGTGTCTTTTCGTTTTAGTTATCTTCAACAACGTGCATCAAAGGATAGGTCTTTTACTTATGAGGTATTGATTGTTGACGATGGAA GTGCTGATGCTACAAAAAGAGTGGCATTTGACTTTGTGGGAAAATACTCGGTGGATAATGTAAGGGTTATCCTTCTTGGGCAAAACCATGGTAAAGGACA AGCTATTAGAAAAGGTATGCTTCATTCACGTGGTGAACTGCTTCTAATGCTGGATGCAGATGGGGCTACAAAAGTTACTGATCTGGAGAAGCTTGAACAG AAGATTCTTGCAGTTGCAAATGCTGAAGATACTGAGGATGGAAAGTCGGGATTTAGGATAGGCGACATGCCAGTAGTTGCATTTGGTTCTCGTGCTCATC TAGAAGAGAAGGCTTTGGCATCAAGGAAATGGTACCGTAATTTTCTGATGAAAGGGTTCCATCTTGTGGTTCTCTTGGCTGCTGGTCCTGGTATTCGTGA TACCCAATGTGGGTTTAAGATGTTTACTAGGGCTGCTGCGAGAAAGCTTTTCGCAAATATCAGACTCAAAAGATGGTGCTTGGACGTGGAGTTGGTGTTT TTATGCAAATGGTTCGGCATCCCCATGTTCGAGATTTCAGTCAGCTGGTCGGAAATTCCAGGGTCCAAGGTGAATTTATTAAGCATCCCAAACATGCTAT GGGAGCTTGCGCTAATGTCAGTCGGGTATAGGACAGGAATGTGGAAAATTTCCAGTTAA
AA sequence Show only first row Show all	>Lus10001691 pacid=23171912 polypeptide=Lus10001691 locus=Lus10001691.g ID=Lus10001691.BGIv1.0 annot-version=v1.0 MELLWKIAEQFFALILIVGLLLLSAMIFEAYRRRNNKHIDHPAYFEDPNSLKQIPCPQLIDPAEKYISLIIPAFNEEHRLPAALDETIKKLEWRNYLLYY MNDDTVSFRFSYLQQRASKDRSFTYEVLIVDDGSADATKRVAFDFVGKYSVDNVRVILLGQNHGKGQAIRKGMLHSRGELLLMLDADGATKVTDLEKLEQ KILAVANAEDTEDGKSGFRIGDMPVVAFGSRAHLEEKALASRKWYRNFLMKGFHLVVLLAAGPGIRDTQCGFKMFTRAAARKLFANIRLKRWCLDVELVF LCKWFGIPMFEISVSWSEIPGSKVNLLSIPNMLWELALMSVGYRTGMWKISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10001691 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10002755 [exp]	3.9	0.8907
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10027375 [exp]	4.2	0.8705
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10037108 [exp]	5.1	0.8841
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10032065 [exp]	6.5	0.8760
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10039619 [exp]	6.9	0.8593
AT3G62140			unknown protein		Lus10038035 [exp]	8.7	0.8837
AT1G17330			Metal-dependent phosphohydrola...		Lus10040985 [exp]	12.7	0.8777
AT5G18940			Mo25 family protein (.1.2)		Lus10034014 [exp]	13.2	0.8306
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10036222 [exp]	14.7	0.8575
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10025743 [exp]	17.0	0.8791

Compare expression of checked genes

Lus10001691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.