Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46540 56 / 1e-09 ENTH/VHS family protein (.1) AT1G08670 52 / 3e-08 ENTH/VHS family protein (.1) AT3G23350 41 / 0.0002 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005164 [exp] 213 / 1e-66 AT2G39630 387 / 2e-131 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10040297 [exp] 79 / 3e-18 AT3G46540 191 / 9e-60 ENTH/VHS family protein (.1) Lus10023415 [exp] 75 / 5e-17 AT3G46540 123 / 3e-34 ENTH/VHS family protein (.1) Lus10040824 [exp] 59 / 2e-10 AT3G46540 277 / 1e-92 ENTH/VHS family protein (.1) Lus10016556 [exp] 57 / 5e-10 AT3G46540 266 / 3e-88 ENTH/VHS family protein (.1) Lus10011810 [exp] 44 / 2e-05 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10021173 [exp] 44 / 4e-05 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G055600 [exp] 62 / 1e-11 AT3G46540 182 / 6e-56 ENTH/VHS family protein (.1) Potri.010G204100 [exp] 60 / 3e-11 AT1G08670 113 / 1e-30 ENTH/VHS family protein (.1) Potri.009G030500 [exp] 58 / 3e-10 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1) Potri.001G239200 [exp] 55 / 3e-09 AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001692 pacid=23171916 polypeptide=Lus10001692 locus=Lus10001692.g ID=Lus10001692.BGIv1.0 annot-version=v1.0 ATGGCAGGAAGCCCATTTCTGGTAGAATTCAAGAGACAAGCATCCTTCTTCATCAAGGAAAAGATCAAAACCACTCGCTTGGCGCTTACAGATGTCACGC CTGCACAATTATGCATATTGAATTGGGGATTGAGGGTGAGAAATATGTCGAGGAGGGTGGTAAAGCTAATTGAAGACGGTGAATTTCTCATTGAAGAAAG AACCAGACTTCGCAACTTAACAAGTGGGATACAAGGGTTTGGAAGCTTCAACAATGACCAACCATCCACTTCTTCTTCGTCGTCTTCGGATTCAGATGAT GGCCAGAGTCCTGATTCGACCGGGAGTCGGAGTCCGGATTCAACTGGCGGCTTCACGCTAACGATGCTGACGAGGCTGAATTCCAACGATGACTGTTCAG AAAATCAGATTCATTCTTATGAAGAACTTCCGACGGAAGATGATGAAACTGAGGCTATATCTATTGAGTGCCATAACCTTTTGTTTAACAGTGACAATCC AACAACAGTCGGCTTATCTTCCCCCTAA
AA sequence Show only first row Show all	>Lus10001692 pacid=23171916 polypeptide=Lus10001692 locus=Lus10001692.g ID=Lus10001692.BGIv1.0 annot-version=v1.0 MAGSPFLVEFKRQASFFIKEKIKTTRLALTDVTPAQLCILNWGLRVRNMSRRVVKLIEDGEFLIEERTRLRNLTSGIQGFGSFNNDQPSTSSSSSSDSDD GQSPDSTGSRSPDSTGGFTLTMLTRLNSNDDCSENQIHSYEELPTEDDETEAISIECHNLLFNSDNPTTVGLSSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46540			ENTH/VHS family protein (.1)		Lus10001692 [exp]	0	1
AT5G01700			Protein phosphatase 2C family ...		Lus10014231 [exp]	7.3	0.8401
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	17.9	0.8305
AT3G02750			Protein phosphatase 2C family ...		Lus10022683 [exp]	19.1	0.8292
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10020741 [exp]	22.7	0.8163
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	27.0	0.8158
					Lus10018443 [exp]	29.0	0.8061
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	31.7	0.8086
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	34.4	0.8087
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10022318 [exp]	37.2	0.7814
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	42.6	0.8056

Compare expression of checked genes

Lus10001692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.