Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12110 674 / 0 ACT11 actin-11 (.1) AT3G53750 673 / 0 ACT3 actin 3 (.1) AT2G37620 673 / 0 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT5G59370 671 / 0 ACT4 actin 4 (.1.2) AT3G46520 670 / 0 ACT12 actin-12 (.1) AT5G09810 669 / 0 ACT2/7, ACT7 actin 7 (.1) AT3G18780 654 / 0 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT1G49240 654 / 0 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT2G42100 602 / 0 Actin-like ATPase superfamily protein (.1) AT2G42170 557 / 0 Actin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001694 [exp] 691 / 0 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005163 [exp] 691 / 0 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005457 [exp] 682 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 682 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10016558 [exp] 682 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10029286 [exp] 679 / 0 AT3G46520 768 / 0.0 actin-12 (.1) Lus10016259 [exp] 677 / 0 AT3G46520 767 / 0.0 actin-12 (.1) Lus10005819 [exp] 674 / 0 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 674 / 0 AT5G09810 778 / 0.0 actin 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G045500 [exp] 684 / 0 AT3G12110 767 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 684 / 0 AT3G12110 765 / 0.0 actin-11 (.1) Potri.010G204300 [exp] 684 / 0 AT3G12110 733 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 684 / 0 AT3G12110 767 / 0.0 actin-11 (.1) Potri.019G010400 [exp] 672 / 0 AT5G09810 774 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 672 / 0 AT5G09810 775 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 668 / 0 AT5G09810 731 / 0.0 actin 7 (.1) Potri.001G453600 [exp] 668 / 0 AT5G09810 769 / 0.0 actin 7 (.1) Potri.006G139900 [exp] 516 / 0 AT5G09810 554 / 0.0 actin 7 (.1) Potri.001G326600 [exp] 310 / 5e-104 AT3G27000 758 / 0.0 WURM, actin related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin
Representative CDS sequence Show only first row Show all	>Lus10001693 pacid=23171913 polypeptide=Lus10001693 locus=Lus10001693.g ID=Lus10001693.BGIv1.0 annot-version=v1.0 ATGGTTGGAATGGGTCAGAAAGATGCCTATGTGGGTGATGAAGCCCAGTCCAAGAGAGGTATTTTGACATTGAAATACCCAATTGAACATGGTATTGTGA ACAATTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAACGAGCTTCGTGTTGCTCCGGAAGAGCACCCTGTTCTTCTGACTGAGGCTCCTCT GAACCCCAAGGCAAATCGTGAGAAGATGACCCAGATCATGTTTGAGACCTTCAATACCCCTGCCATGTATGTTGCTATTCAGGCTGTATTGTCACTTTAT GCCAGTGGTCGTACAACTGGTATCGTGCTAGATTCTGGTGATGGTGTTAGCCACACAGTCCCCATCTACGAGGGTTACGCTCTCCCTCATGCCATCCTTC GTCTCGACCTTGCTGGGCGTGACCTTACAGATAGCTTAATGAAGATCCTCACCGAGCGGGGTTATTCTTTTACCACTACAGCAGAACGGGAAATTGTGAG GGACATGAAAGAAAAGCTAGCTTACATCGCTCTCGACTTTGAGCAGGAAATGGAAACAGCCAAAACTAGCTCATCTGTCGAGAAGAGCTACGAATTGCCT GATGGACAGGTCATCACCATAGGTGCTGAGCGTTTCCGTTGCCCGGAAGTCCTGTTCCAACCATCCATGATAGGAATGGAAGCTGCAGGGATCCACGAGA CAACTTACAATTCCATCATGAAGTGCGACGTGGATATTAGGAAGGACTTGTACGGTAACATTGTGCTCAGTGGTGGTTCAACTATGTTCCCTGGTATTGC TGATAGAATGAGCAAAGAGATCTCTGCCCTTGCTCCAAGCAGCATGAAGATCAAGGTTGTTGCACCACCAGAAAGGAAATACAGTGTTTGGATTGGTGGT TCCATCTTAGCTTCGCTTAGCACCTTCCAGCAGATGTGGATCGCAAAGGCAGAGTACGATGAGTCTGGACCGTCAATTGTTCACAGGAAGTGCTTCTGA
AA sequence Show only first row Show all	>Lus10001693 pacid=23171913 polypeptide=Lus10001693 locus=Lus10001693.g ID=Lus10001693.BGIv1.0 annot-version=v1.0 MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDFEQEMETAKTSSSVEKSYELP DGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGG SILASLSTFQQMWIAKAEYDESGPSIVHRKCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12110		ACT11	actin-11 (.1)		Lus10001693 [exp]	0	1
AT3G15190			chloroplast 30S ribosomal prot...		Lus10041925 [exp]	1.7	0.9573
AT2G43030			Ribosomal protein L3 family pr...		Lus10013640 [exp]	5.8	0.9464
AT2G43030			Ribosomal protein L3 family pr...		Lus10001337 [exp]	8.1	0.9442
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10005668 [exp]	9.2	0.9384
AT4G36390			Methylthiotransferase (.1)		Lus10041793 [exp]	10.0	0.9188
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10013168 [exp]	13.2	0.9318
AT3G08920			Rhodanese/Cell cycle control p...		Lus10004811 [exp]	14.3	0.9375
AT1G11430			plastid developmental protein ...		Lus10007615 [exp]	18.6	0.8733
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Lus10033195 [exp]	19.0	0.9035
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	20.5	0.9312

Compare expression of checked genes

Lus10001693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.