Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12110 767 / 0 ACT11 actin-11 (.1) AT3G53750 766 / 0 ACT3 actin 3 (.1) AT2G37620 766 / 0 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT5G59370 764 / 0 ACT4 actin 4 (.1.2) AT3G46520 763 / 0 ACT12 actin-12 (.1) AT5G09810 763 / 0 ACT2/7, ACT7 actin 7 (.1) AT3G18780 742 / 0 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT1G49240 740 / 0 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT2G42100 675 / 0 Actin-like ATPase superfamily protein (.1) AT2G42090 568 / 0 ACT9 actin 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005163 [exp] 785 / 0 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005457 [exp] 777 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 777 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10016558 [exp] 777 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10029286 [exp] 773 / 0 AT3G46520 768 / 0.0 actin-12 (.1) Lus10016259 [exp] 771 / 0 AT3G46520 767 / 0.0 actin-12 (.1) Lus10006783 [exp] 765 / 0 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 765 / 0 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005819 [exp] 765 / 0 AT5G09810 778 / 0.0 actin 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G204300 [exp] 776 / 0 AT3G12110 733 / 0.0 actin-11 (.1) Potri.016G045500 [exp] 776 / 0 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 776 / 0 AT3G12110 767 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 775 / 0 AT3G12110 765 / 0.0 actin-11 (.1) Potri.001G309500 [exp] 764 / 0 AT5G09810 775 / 0.0 actin 7 (.1) Potri.019G010400 [exp] 763 / 0 AT5G09810 774 / 0.0 actin 7 (.1) Potri.001G453600 [exp] 761 / 0 AT5G09810 769 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 719 / 0 AT5G09810 731 / 0.0 actin 7 (.1) Potri.006G139900 [exp] 573 / 0 AT5G09810 554 / 0.0 actin 7 (.1) Potri.001G326600 [exp] 352 / 1e-119 AT3G27000 758 / 0.0 WURM, actin related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin
Representative CDS sequence Show only first row Show all	>Lus10001694 pacid=23171917 polypeptide=Lus10001694 locus=Lus10001694.g ID=Lus10001694.BGIv1.0 annot-version=v1.0 ATGGCAGAAGGTGAGGATATCCAGCCCCTCGTCTGCGACAATGGAACAGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCCCCTCGTGCTGTGTTCC CCAGTATTGTTGGTCGTCCACGTCACACTGGCGTGATGGTTGGAATGGGTCAGAAAGATGCCTATGTGGGTGATGAAGCCCAGTCCAAGAGAGGTATTTT GACATTGAAATACCCAATTGAACATGGTATTGTGAACAATTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAACGAGCTTCGTGTTGCTCCG GAAGAGCACCCTGTTCTTCTGACTGAGGCTCCTCTGAACCCCAAGGCAAATCGTGAGAAGATGACCCAGATCATGTTTGAGACCTTCAATACCCCTGCCA TGTATGTTGCTATTCAGGCTGTATTGTCACTGTATGCCAGTGGTCGTACAACTGGTATCGTGCTAGATTCTGGTGATGGTGTTAGCCACACAGTCCCCAT CTACGAGGGTTACGCTCTCCCTCATGCCATCCTTCGTCTCGACCTTGCTGGGCGTGACCTTACAGATAGCTTAATGAAGATCCTCACCGAGCGGGGTTAT TCTTTTACCACTACAGCAGAACGGGAAATTGTGAGGGACATGAAAGAAAAGCTAGCTTACATCGCTCTCGACTTTGAGCAGGAAATGGAAACAGCCAAAA CTAGCTCATCTGTCGAGAAGAGTTACGAATTGCCTGATGGACAGGTCATCACCATAGGTGCTGAGCGTTTCCGTTGCCCGGAAGTCCTGTTCCAACCATC CATGATAGGAATGGAAGCTGCAGGGATCCACGAGACAACTTACAATTCCATCATGAAGTGCGACGTGGATATTAGGAAGGACTTGTACGGTAACATTGTG CTCAGTGGTGGTTCAACTATGTTCCCTGGTATTGCTGATAGAATGAGCAAAGAGATCTCTGCCCTTGCTCCAAGCAGCATGAAGATCAAGGTTGTTGCAC CACCAGAAAGGAAATACAGTGTTTGGATTGGCGGTTCCATCTTAGCTTCGCTTAGCACCTTCCAGCAGATGTGGATCGCAAAGGCAGAGTACGATGAGTC TGGACCGTCAATTGTTCACAGGAAGTGCTTCTGA
AA sequence Show only first row Show all	>Lus10001694 pacid=23171917 polypeptide=Lus10001694 locus=Lus10001694.g ID=Lus10001694.BGIv1.0 annot-version=v1.0 MAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAP EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGY SFTTTAEREIVRDMKEKLAYIALDFEQEMETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV LSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12110		ACT11	actin-11 (.1)		Lus10001694 [exp]	0	1
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10043079 [exp]	2.4	0.9618
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031791 [exp]	2.8	0.9531
AT5G04590		SIR	sulfite reductase (.1)		Lus10027360 [exp]	3.0	0.9526
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10031417 [exp]	7.4	0.9451
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Lus10002361 [exp]	8.4	0.9289
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	8.5	0.9478
AT1G62780			unknown protein		Lus10024592 [exp]	9.4	0.9343
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	10.7	0.9357
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10014577 [exp]	11.0	0.9325
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10017446 [exp]	11.9	0.8918

Compare expression of checked genes

Lus10001694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.