Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55360 540 / 0 ECR, CER10, ATTSC13, TSC13 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT5G16010 76 / 1e-15 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT2G38050 50 / 6e-07 DWF6, DET2, ATDET2 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005162 [exp] 632 / 0 AT3G55360 541 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10008951 [exp] 52 / 1e-07 AT5G16010 272 / 4e-91 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10021127 [exp] 51 / 1e-07 AT2G38050 256 / 3e-87 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10017183 [exp] 51 / 3e-07 AT2G38050 138 / 2e-64 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G055400 [exp] 572 / 0 AT3G55360 513 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G204400 [exp] 557 / 0 AT3G55360 486 / 7e-175 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245332 [exp] 76 / 9e-16 AT5G16010 289 / 1e-98 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G013100 [exp] 76 / 1e-15 AT5G16010 298 / 4e-102 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245266 [exp] 74 / 6e-15 AT5G16010 291 / 2e-99 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012800 [exp] 67 / 9e-13 AT5G16010 266 / 3e-89 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245200 [exp] 59 / 6e-10 AT5G16010 295 / 9e-101 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.013G134433 [exp] 58 / 2e-09 AT2G38050 303 / 3e-104 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012700 [exp] 56 / 7e-09 AT5G16010 278 / 2e-94 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.016G110600 [exp] 56 / 8e-09 AT2G38050 350 / 1e-122 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF02544 [flax] [poplar] Steroid_dh 3-oxo-5-alpha-steroid 4-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10001695 pacid=23171911 polypeptide=Lus10001695 locus=Lus10001695.g ID=Lus10001695.BGIv1.0 annot-version=v1.0 ATGAAGGTCACTGTTGTTTCTCGCAGTGGCAAAGAGGTCGTCAAAGGAGGCCTCGACCTCTCTCCTTCGGCTACGGTGGCTGATCTGCAAGACGCAATTC ATAAGCGAACCAAAAAGTTCTATCCTTCAAGGCAGCGGTTGACCCTTCCTGTCTCTCCCGGGTCGAAAGAGAGGCCTACAGTGCTCAACTACAAGAAGAG CCTCAACGAATACACTGATGGAAACTCAGAAAGCTTGACGGTCGTTTTCAAGGATCTAGGTCCCCAAGTCTCCTACCGTACACTCTTCTTCTTTGAGTAC TTGGGACCTTTGCTACTCTACCCAGTCTTCTATTTCTTCAACGTCTATGAATTCCTTGGCTACAAAGGTGAGCGTGTTATTCAGCCCGTTCAGACATATG CTCTATACTACTGGTGCTTCCACTACTTCAAGCGCATTATGGAGACATTTTTCATCCACCGATTCAGCCACGCTACCTCGCCTTTATCAAACGTGTTCCG TAACTGTACATACTATTGGACATTTGGTTGCTACATTGCGTACTATCTGAATCACCCACTCTACAGCCCTGTTGGTGACCTTCAGATGAAGATCGGTTTG GGTTTTGGTGTGCTTTGCCAAATCTCAAACTTGTACTGCCACATACTGCTTAGCAACCTCAGAGGCAAAGATGGAAGTGGCGGATATCAAATCCCTCATG GGTTTCTTTTCAACATTGTCACGTGTGCAAATTACACAACGGAGATCTATCAGTGGTTGGGCTTCAACATCGCAACTCAGACAATTGCAGGCTATATCTT TCTTGTGGTTGCTGCTTCGATCATGACGAACTGGGCTCTTGCAAAGCATCGAAGGTTGAGGAAGCTATTTGATGGGAAGGATGGAAGGCCGAAGTACCCA CGCCGCTGGGTGATACTACCTCCATTCCTGTAG
AA sequence Show only first row Show all	>Lus10001695 pacid=23171911 polypeptide=Lus10001695 locus=Lus10001695.g ID=Lus10001695.BGIv1.0 annot-version=v1.0 MKVTVVSRSGKEVVKGGLDLSPSATVADLQDAIHKRTKKFYPSRQRLTLPVSPGSKERPTVLNYKKSLNEYTDGNSESLTVVFKDLGPQVSYRTLFFFEY LGPLLLYPVFYFFNVYEFLGYKGERVIQPVQTYALYYWCFHYFKRIMETFFIHRFSHATSPLSNVFRNCTYYWTFGCYIAYYLNHPLYSPVGDLQMKIGL GFGVLCQISNLYCHILLSNLRGKDGSGGYQIPHGFLFNIVTCANYTTEIYQWLGFNIATQTIAGYIFLVVAASIMTNWALAKHRRLRKLFDGKDGRPKYP RRWVILPPFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Lus10001695 [exp]	0	1
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Lus10025335 [exp]	1.0	0.9380
AT4G09890			Protein of unknown function (D...		Lus10005802 [exp]	1.4	0.8958
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Lus10005162 [exp]	3.5	0.8631
AT5G35180			Protein of unknown function (D...		Lus10040011 [exp]	3.5	0.8420
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10029109 [exp]	3.9	0.8681
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Lus10024408 [exp]	3.9	0.8461
AT1G34770			unknown protein		Lus10033452 [exp]	7.0	0.8055
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10037296 [exp]	11.5	0.7659
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10006248 [exp]	12.4	0.8024
AT4G25330			unknown protein		Lus10006358 [exp]	18.3	0.8049

Compare expression of checked genes

Lus10001695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.