Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55460 369 / 7e-127 C2H2ZnF DNA/RNA-binding protein Kin17, conserved region (.1) AT5G51795 188 / 4e-57 DNA/RNA-binding protein Kin17, conserved region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005161 [exp] 540 / 0 AT1G55460 596 / 0.0 DNA/RNA-binding protein Kin17, conserved region (.1) Lus10012271 [exp] 166 / 4e-52 AT1G55460 152 / 4e-46 DNA/RNA-binding protein Kin17, conserved region (.1) Lus10012272 [exp] 64 / 7e-13 AT1G55460 41 / 1e-05 DNA/RNA-binding protein Kin17, conserved region (.1) Lus10039439 [exp] 46 / 8e-06 ND 45 / 1e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G204900 [exp] 420 / 3e-147 AT1G55460 561 / 0.0 DNA/RNA-binding protein Kin17, conserved region (.1) Potri.008G055300 [exp] 400 / 2e-139 AT1G55460 546 / 0.0 DNA/RNA-binding protein Kin17, conserved region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF10357 [flax] [poplar] Kin17_mid Domain of Kin17 curved DNA-binding protein
Representative CDS sequence Show only first row Show all	>Lus10001697 pacid=23171907 polypeptide=Lus10001697 locus=Lus10001697.g ID=Lus10001697.BGIv1.0 annot-version=v1.0 ATGCCGAAGAACGATTTCCTAACCCCGAAGGCGATCGCCAACAGGATAAAGGCGAAAGGTCTGCAGAAGCTGCGATGGTACTGCCAGATGTGCCAGAAGC AGTGCAGGGATGAGAACGGCTTCAAGTGCCACTGCATGAGCGAGAGCCACCAGCGCCAGATGCTAATCTTCGGCCAAAACCCTAACCGCGTCGTCGAGGG CTACACCGACGAGTTCGAGACTGGATTCCTCGACCTCATGAAGCGCAGCCACCGATTCTCCCGCGTAGCTGCCACCGTCGTCTACAACGAGTACATCCAC GACCGCCACCACGTCCATATGAACTCCACGCAGTGGGCTACGCTCACCGAGTTCGTCAAGCACCTAGGCCGGACGGGGAAGTGCAAAGTTGATGAGACCC CTAAAGGTTGGTTTATCACTTACATCGATCGGGATTCCGAGACCATGTTCAAGGAGAAGTTGAAGAGCAAGAGAGTTAGGGCGGATATGGTGGACGAGGA GAGACAGGAAAGGGAAATCCAGAAGCAGATTGAGAAGGCAGAGCAGTTGTTGAAAAGTGGGGACGGAGAGGGTAATGGTGTTGATGCTGATGCTGTTGAG CCTCCGGCGAAGGAATTGAAGCTTGATGCTGAAGGGGTTAAGATTGGATTTCAACTGGGTTCCAAGAGTAGCAACAATGTGGGGAAGGATAGAGGTGAGA GTTCGAGTTCAAGATTGGTTTTTGAGGATGTTGAGGAGGAAAAATATGGGAAGAACTCGAACAAGAGTAGAGCAAGTAGTGATGTTGGGAAAGGTGGGAC GTCTGCATTAGATGAGCTTATGAGAGAGGAAGAGAAGGTGAAGGAGAGAAAGAATCGGAAGGATTACTGGCTGTTTGAAGGGACTATTGTTAAGGTTATG AGCAAGGAAAGGAGAGAAAGAACCGGAAGGATTACTGGCTGTTTGAAGGGACTATTGTTAAGGTTATGA
AA sequence Show only first row Show all	>Lus10001697 pacid=23171907 polypeptide=Lus10001697 locus=Lus10001697.g ID=Lus10001697.BGIv1.0 annot-version=v1.0 MPKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMLIFGQNPNRVVEGYTDEFETGFLDLMKRSHRFSRVAATVVYNEYIH DRHHVHMNSTQWATLTEFVKHLGRTGKCKVDETPKGWFITYIDRDSETMFKEKLKSKRVRADMVDEERQEREIQKQIEKAEQLLKSGDGEGNGVDADAVE PPAKELKLDAEGVKIGFQLGSKSSNNVGKDRGESSSSRLVFEDVEEEKYGKNSNKSRASSDVGKGGTSALDELMREEEKVKERKNRKDYWLFEGTIVKVM SKERRERTGRITGCLKGLLLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001697 [exp]	0	1
AT2G15980			Tetratricopeptide repeat (TPR)...		Lus10020712 [exp]	1.7	0.8263
AT3G57910			D111/G-patch domain-containing...		Lus10023819 [exp]	2.0	0.8209
AT5G18400			Cytokine-induced anti-apoptosi...		Lus10010213 [exp]	3.5	0.8143
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	6.6	0.8458
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	7.7	0.7905
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10022459 [exp]	7.9	0.8402
AT5G38050			RNA polymerase II transcriptio...		Lus10009106 [exp]	11.6	0.7457
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023939 [exp]	11.8	0.8112
AT4G00755			F-box family protein (.1.2)		Lus10036561 [exp]	12.7	0.7698
AT2G24370			Protein kinase protein with ad...		Lus10009896 [exp]	13.5	0.7191

Compare expression of checked genes

Lus10001697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.