Plant FIBer expression Database

Lus10001698 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12590 908 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005160
[exp]
1405 / 0 AT3G12590 1536 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G052700
[exp]
1046 / 0 AT3G12590 1518 / 0.0 unknown protein
Potri.010G207900
[exp]
1009 / 0 AT3G12590 1504 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10001698 pacid=23171904 polypeptide=Lus10001698 locus=Lus10001698.g ID=Lus10001698.BGIv1.0 annot-version=v1.0
ATGCTTGAGGAGATGCTTTCATCTCCAAAAGCAACATGCCGAGTTCGTGCGTTTGATTTAATTTTGAACCTCGGGGTTCATGCTCATTTATTAGAACCAA
TGATGGTTGGTGATACTTCCACAATTGAAGAAGAGTACGGACAAGAGTCCTTGCTTGAGAATCAAGACAAACTTGCAACACCTGAGAAGAGGAAAGCAGA
TTCATTTGAGAATACGGATCCTTCATCAGCTATTGGCAAGTTCGAGTCCTGGATCTTAAACATCTTGTGCGAGACACTTTTGCTTCTTGTCCAGACAGAG
GAGCAGGAAGAGTCTATTTGGGCTTCTGCACTAAGTTGTCTGCTGTACTTCGTCTGTGATAGAGGGAAAATTTTGAGAAACCGTCTAGAAGGCCTGGATA
TAAGGGTTATTAAAGCATTCATAATGACCAGCAGGAGAAATTGCTGGGCTGAATTAGTGCATAGCAAGCTTATTTGCATGTTGACGAACATGTTCTACCA
AATTCCAGATGACCCTGTTGAGACTGTTTTGAAGACTCCTGTGTTTCTTAAAGACCAGGTTGACCTGATCGGTGGTATTGAGTTCATTTTCTATGAGTAT
TCTCTCGCCAATTTGAGGGAGGATAGGAGAAACCTCTATTTGGTTCTTTTTGATTATGTTTTGCACCAAATTAATCAAGCATGTGCAACTGCTGGAGTTT
CAGAATATAGCAATGATGAGATCCACCCTCTTGCTACTTTGTTTTCTCTTGTTGATGCACCCGAGGCTTTCTATATTTCTGTTAAACTTGGAGTGGAAGG
CATTGCGGAGCTTCTGAGAAGATCAATTTCTTCTGCACTGGCTAGATATTCGAATAACGAAAGATTAAATATGCTGTTGGAGAATATAACGGAGACATTT
GACCGGATAATCAATTCTTTTACTCATGTTGACAAGGAGTTCTTCCATCTGATACAAGTAACCAAGTCTCAAAAATTTCTAGAAAGCATTAAAAGCGAAA
GCCCAAGAAATGGTATTGTCATGAAAGCTAAGCTGTCATGGGCCACACTGCACTCACTTCTTCATTCTGATAGAATTGCGTGCCGTCAGAATGGCTATAT
CTGGTTAGGTGACTTGCTTATTTCAGAAATTAGTGGGGGAAGAGACATTAGAATATGGTCCAACATCAACGACTTGCAGCATATAATCACCCATGCAGGT
GCAAGTGACGATACGGAAGCTGCTTCAGATGTTCCTTTGTCCATTTGGCTGATGTGTGGACTTCTCAAATCCAAACACAATGTTATTAGATGGGGATTTC
TATTCGTTTTGGATCGATTTCTTGTGCGCTGCAAATCTTTATTGGATGAGAATGAAATGCAGCAGCCTGGTGTTAGTATTGTTACCCGTGGAGATGCTGA
TAGCCGGCTTGAGAAAGCAAATGCAGTTGTAGACATCATGAGCAGTGCTTTATCCTTGGTCGCCCAAATTAATGAAACTGACCGCTTTAATATTTTGAAG
ATGTGTGAAATTTTGTTCTCTCAATTATGCCTGAAAGTTCACCCGCTGTCTGCTATGCCATATGGAGAACGGGTACGTCGTGATATTGTTCATGTTGGCA
TGGATAAAACTGAAAGAGTCGATTCAGATGATCACATCTCTCAGTTGGAGAATCACTCGACGGATATTTCGGATGAAAGAGATATCAAATTCAGTTGCAG
TGGCAATTCAATGACGCATGAAACGGCGTCAATGGCTGCAATGCTTCTCCAAGGGAAGGCTATAGTTCCTATGCAATTGGTCGCACGGGTTCCTGCTGCT
TTATTTTATTGGCCATTGATTCAACTAGCTGGTGCAGCTACAGATGATATAGCTCTGGGTGTTGCAGTTGGAAGCAAGGGAAGGGGAAACCTCCCTGGCG
CTGCATCCGACATTAGAGCCACACTTCTATTACTTCTTATTGGAAAATGCACAGTCGATCCTTCTGCCTTTGAAGAAGTTGGCGGCGAAGAATTTTTCAG
GGAACTTTTGGATGATACAGATTCGAGGGTAGCATATTACTCTTCAGCATTTCTCTTGAAGAGAATGATGACGGAGAAACCAGACGAATACCAGCACATG
CTTCAAAATCTTATATTTAAAGCCCAACAGAGCAACAATGAAAAGTTGTTGGAAAACCCCTACTTGCAGATGCGTGGCATACTTCAGCTACGCACAAAGA
GAGGAGCACGGTATGCCTTGCTTCTCAGTCAGGCAAAGAGTTCCAGAATATACGTTGAGGGTCCTCCTGGATACAGCTTCTTTGACTGCTGA
AA sequence
>Lus10001698 pacid=23171904 polypeptide=Lus10001698 locus=Lus10001698.g ID=Lus10001698.BGIv1.0 annot-version=v1.0
MLEEMLSSPKATCRVRAFDLILNLGVHAHLLEPMMVGDTSTIEEEYGQESLLENQDKLATPEKRKADSFENTDPSSAIGKFESWILNILCETLLLLVQTE
EQEESIWASALSCLLYFVCDRGKILRNRLEGLDIRVIKAFIMTSRRNCWAELVHSKLICMLTNMFYQIPDDPVETVLKTPVFLKDQVDLIGGIEFIFYEY
SLANLREDRRNLYLVLFDYVLHQINQACATAGVSEYSNDEIHPLATLFSLVDAPEAFYISVKLGVEGIAELLRRSISSALARYSNNERLNMLLENITETF
DRIINSFTHVDKEFFHLIQVTKSQKFLESIKSESPRNGIVMKAKLSWATLHSLLHSDRIACRQNGYIWLGDLLISEISGGRDIRIWSNINDLQHIITHAG
ASDDTEAASDVPLSIWLMCGLLKSKHNVIRWGFLFVLDRFLVRCKSLLDENEMQQPGVSIVTRGDADSRLEKANAVVDIMSSALSLVAQINETDRFNILK
MCEILFSQLCLKVHPLSAMPYGERVRRDIVHVGMDKTERVDSDDHISQLENHSTDISDERDIKFSCSGNSMTHETASMAAMLLQGKAIVPMQLVARVPAA
LFYWPLIQLAGAATDDIALGVAVGSKGRGNLPGAASDIRATLLLLLIGKCTVDPSAFEEVGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEKPDEYQHM
LQNLIFKAQQSNNEKLLENPYLQMRGILQLRTKRGARYALLLSQAKSSRIYVEGPPGYSFFDC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G12590 unknown protein Lus10001698
[exp]
0 1
AT1G76850 SEC5A exocyst complex component sec5... Lus10040488
[exp]
1.4 0.8939
AT5G26760 unknown protein Lus10005906
[exp]
1.7 0.9016
AT5G04610 S-adenosyl-L-methionine-depend... Lus10003963
[exp]
2.2 0.8515
AT5G35840 PHYC phytochrome C (.1) Lus10006389
[exp]
2.8 0.8563
AT2G16880 Pentatricopeptide repeat (PPR)... Lus10041421
[exp]
4.0 0.8285
AT5G19670 Exostosin family protein (.1) Lus10012973
[exp]
6.5 0.8464
AT5G35840 PHYC phytochrome C (.1) Lus10012342
[exp]
7.2 0.8151
AT5G62600 MOS14 modifier of snc1-1, 14, ARM re... Lus10042159
[exp]
7.7 0.8583
AT4G20300 Protein of unknown function (D... Lus10036240
[exp]
9.3 0.7954
AT4G00840 DHHC-type zinc finger family p... Lus10030211
[exp]
11.0 0.7559

Lus10001698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.