Plant FIBer expression Database

Lus10001699 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12590 433 / 3e-142 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005160
[exp]
693 / 0 AT3G12590 1536 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G207900
[exp]
473 / 4e-157 AT3G12590 1504 / 0.0 unknown protein
Potri.008G052700
[exp]
439 / 1e-144 AT3G12590 1518 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10001699 pacid=23171921 polypeptide=Lus10001699 locus=Lus10001699.g ID=Lus10001699.BGIv1.0 annot-version=v1.0
ATGTTGAATTCTGTTTATTCCTCCGTTGAACTTTGGCAATCCCCAGCTGTAGTTGCAAGGTGTGTGGGTCTTTTGAAGCGGCACCTTGTAAGATATAAAC
CTAGTGAGGAGACATTACTGCAGATTGATCGATTTTGTGTGAATACAATCTCTGAGTGTGATAACAGTGCAAGTCGAAGATCAGCACCATTGTCACAGTC
TATGCATCAGCAATTCATTACCTCTGCTGCATCCGCTTATAATCTGCCTTCTCTCCCTGTTTCTAGTTTTGCTTCTGGGGCACTTGTAAAGTCATTAAAT
TATGTACGTTCACTAGTAGCTCAGCATATTCCAAAGCGGTCATTTCAGCCAGCTGCATTTGCTGGGTCTCCATCTTCATCAAGACAGGCACTTCCTGCGT
TGTCTTCATTTTTGCGTAAATCCTTTAACTCCCAATTAAGCCCTGCAAATACTACTGAATCTTCAGACAGCAGAGATGTTGCTGCTTTGCCGGTTTCACA
TTTTACCAATATGGAAAAAGCTGATGCGATGGAGGACATTGATCACATTGGATATGATGTTTTAAACTGTCGTTGGGCTGGAGATAATCTGTTTTCAGCA
TTGTCCTCTGAAAGTGATCGTGCGTCTGTGCTGGAGGATATGCGTACCCATAGTCTATTAGAATTGGGTGCTGCAGCGCTTCTTGTTGGAGACATGGAAG
CGAAGATGAAGGATCAACCTTGGAAATATTTTGGAACGGCTGATATGCCGTATCTTGATCAGCTTTTGCAGCCTTCTCCGATCTCTACAATTACCAATTC
AGCCTCTGCTCGTTCACACTTAAGAGCAATAACAGCATCTAAACGCTGTAAAGCAGGACCACCTCAGATCTGGGAAGATTCTCCTTTAAGCACATTCCGA
CCACGAGCGAGGCCACTATTCCAATATCGTCATTATAGTGAACAACAACCTTTACGATTAAATCCAGCAGAGGTATGTGAGGTTATTGCTGCAGTTGGCT
CAGAGACGTATAGTCCAATGGCCCCACCGACACTGTCATCACGATTAAGTAATAACACTGGCAAGCCATCAATGGATGTGGCAGTGAGCGTACTTATTAA
GCTCGTTATTGATATGTAA
AA sequence
>Lus10001699 pacid=23171921 polypeptide=Lus10001699 locus=Lus10001699.g ID=Lus10001699.BGIv1.0 annot-version=v1.0
MLNSVYSSVELWQSPAVVARCVGLLKRHLVRYKPSEETLLQIDRFCVNTISECDNSASRRSAPLSQSMHQQFITSAASAYNLPSLPVSSFASGALVKSLN
YVRSLVAQHIPKRSFQPAAFAGSPSSSRQALPALSSFLRKSFNSQLSPANTTESSDSRDVAALPVSHFTNMEKADAMEDIDHIGYDVLNCRWAGDNLFSA
LSSESDRASVLEDMRTHSLLELGAAALLVGDMEAKMKDQPWKYFGTADMPYLDQLLQPSPISTITNSASARSHLRAITASKRCKAGPPQIWEDSPLSTFR
PRARPLFQYRHYSEQQPLRLNPAEVCEVIAAVGSETYSPMAPPTLSSRLSNNTGKPSMDVAVSVLIKLVIDM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G12590 unknown protein Lus10001699
[exp]
0 1
AT3G12590 unknown protein Lus10005160
[exp]
1.4 0.9706
AT5G10470 KAC1, KCA1 KINESIN CDKA;1 ASSOCIATED 1, k... Lus10035941
[exp]
1.7 0.9720
AT1G55325 MAB2, GCT MACCHI-BOU 2, GRAND CENTRAL, R... Lus10016684
[exp]
2.8 0.9450
AT5G27970 ARM repeat superfamily protein... Lus10004116
[exp]
4.6 0.9647
AT4G00800 SETH5 transducin family protein / WD... Lus10002679
[exp]
5.3 0.9452
AT4G28760 Protein of unknown function (D... Lus10011912
[exp]
10.6 0.9304
AT2G07360 SH3 domain-containing protein ... Lus10008548
[exp]
11.6 0.9399
AT2G36850 CHOR, ATGSL8, A... CHORUS, glucan synthase-like 8... Lus10040892
[exp]
13.9 0.9496
AT1G58250 SAB SABRE, Golgi-body localisation... Lus10024283
[exp]
15.8 0.9460
AT3G54280 RGD3, ATBTAF1, ... ROOT GROWTH DEFECTIVE 3, DNA b... Lus10013625
[exp]
16.8 0.9454

Lus10001699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.