Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65520 247 / 5e-83 PEC11, ECHIC, ATECI1 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) AT4G14440 221 / 7e-73 HCD1, ATECI3 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) AT4G14430 181 / 4e-57 PEC12, IBR10, ECHIB, ATECI2 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) AT4G16210 45 / 2e-05 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005159 [exp] 248 / 6e-83 AT1G65520 279 / 4e-95 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Lus10022199 [exp] 194 / 4e-62 AT4G14430 310 / 2e-107 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Lus10021207 [exp] 193 / 9e-62 AT4G14430 303 / 1e-104 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Lus10041153 [exp] 188 / 1e-59 AT4G14440 306 / 4e-106 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) Lus10041154 [exp] 179 / 2e-56 AT4G14440 306 / 5e-106 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) Lus10005158 [exp] 170 / 3e-54 AT1G65520 140 / 1e-42 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207800 [exp] 311 / 3e-108 AT1G65520 276 / 3e-94 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Potri.010G073700 [exp] 193 / 9e-62 AT4G14430 293 / 5e-101 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Potri.008G164900 [exp] 192 / 3e-61 AT4G14430 280 / 1e-95 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Potri.008G052801 [exp] 108 / 7e-30 AT1G65520 140 / 3e-42 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Potri.001G153300 [exp] 45 / 3e-05 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10001701 pacid=23171915 polypeptide=Lus10001701 locus=Lus10001701.g ID=Lus10001701.BGIv1.0 annot-version=v1.0 ATGTGCACGTTAGAGAAGAAGGGCAACATATACATCCTGACGTTGACGGGGTCAGGCGAGCACCGTCTCAACCCTCATCTCATCGACTCGATCCGATCCG CTCTATCAACCCTCACAGCCAATCCAATCTCATCCTCCTCCGTTCTAATCACCACATCCCACGGCAAATTCTTCTCCAATGGCTTCGATCTCTCTTACGC TCAATCCTCCTTACCACGTCTCCAACTCATGTCCTCCAAGCTACAATCCTTAATCTCCCAACTCATCTCTCTCCCCATGCCGACGATCGCAGCAGTCTCC GGCCACGCATCCGCCGCCGGGATGATCCTAGCCTTGAGCCATGACTACGTTGTGATGAGGAAGGACAGAGGGTTTCTGTACATGAGCGAGGTCGATATCG CACTTGTCATACCCGATTGGTTCGTGACTCTACTGAACAGCAAGATTGGGAGCGGGAGCATTCGGCAGGAGGTTATTATGTCGGCAGCCAAGCTTACGGC GGAGATGGCAGTGGAGAGAGGGATTGTTCACTCTGCTCATCATGGTGCTGAAGCCACTGTTGAAGGTGCGATTAGGCTGGGGGAGGAGCTTTTAAGACGG AGGTGGAATGGCCAAGTTTATGCCAAGAATAGGATGGTGGTTTTGAGGGATGTTGTTAAGGAAATTGACGAGCAGTCGACTCGAACTGGATCAAAGCTGT AA
AA sequence Show only first row Show all	>Lus10001701 pacid=23171915 polypeptide=Lus10001701 locus=Lus10001701.g ID=Lus10001701.BGIv1.0 annot-version=v1.0 MCTLEKKGNIYILTLTGSGEHRLNPHLIDSIRSALSTLTANPISSSSVLITTSHGKFFSNGFDLSYAQSSLPRLQLMSSKLQSLISQLISLPMPTIAAVS GHASAAGMILALSHDYVVMRKDRGFLYMSEVDIALVIPDWFVTLLNSKIGSGSIRQEVIMSAAKLTAEMAVERGIVHSAHHGAEATVEGAIRLGEELLRR RWNGQVYAKNRMVVLRDVVKEIDEQSTRTGSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10001701 [exp]	0	1
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10005746 [exp]	4.0	0.9152
AT2G45380			unknown protein		Lus10015873 [exp]	7.1	0.8955
AT1G74360			Leucine-rich repeat protein ki...		Lus10003477 [exp]	13.1	0.9299
AT5G13810			Glutaredoxin family protein (....		Lus10024164 [exp]	22.2	0.8825
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10001577 [exp]	24.3	0.8884
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10020827 [exp]	36.3	0.8624
AT1G74360			Leucine-rich repeat protein ki...		Lus10003478 [exp]	39.7	0.8896
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008537 [exp]	40.7	0.8725
AT1G80450			VQ motif-containing protein (....		Lus10042423 [exp]	59.5	0.8962
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003266 [exp]	61.0	0.8961

Compare expression of checked genes

Lus10001701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.