Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39570 553 / 0 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT2G36840 383 / 5e-131 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1) AT3G01990 46 / 3e-05 ACR6 ACT domain repeat 6 (.1) AT1G69040 43 / 0.0004 ACR4 ACT domain repeat 4 (.1.2) AT4G22780 42 / 0.0006 ACR7 ACT domain repeat 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005157 [exp] 773 / 0 AT2G39570 587 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10004948 [exp] 452 / 7e-158 AT2G39570 479 / 7e-169 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10023921 [exp] 393 / 7e-135 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10014418 [exp] 386 / 4e-132 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10017470 [exp] 365 / 1e-123 AT2G36840 507 / 1e-179 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10005447 [exp] 358 / 1e-121 AT2G36840 385 / 2e-132 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10028812 [exp] 170 / 2e-49 AT2G36840 288 / 1e-95 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10007004 [exp] 52 / 8e-07 AT1G12420 288 / 2e-92 ACT domain repeat 8 (.1) Lus10036827 [exp] 47 / 1e-05 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G052900 [exp] 561 / 0 AT2G39570 574 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.010G207700 [exp] 552 / 0 AT2G39570 560 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.001G237100 [exp] 492 / 7e-174 AT2G39570 533 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.001G442600 [exp] 390 / 6e-134 AT2G36840 546 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.010G228500 [exp] 384 / 2e-131 AT2G36840 525 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.011G154600 [exp] 382 / 1e-130 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.008G033200 [exp] 366 / 2e-124 AT2G36840 513 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.003G116600 [exp] 63 / 2e-10 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1) Potri.001G115600 [exp] 59 / 3e-09 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.010G138600 [exp] 47 / 2e-05 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10001702 pacid=23171920 polypeptide=Lus10001702 locus=Lus10001702.g ID=Lus10001702.BGIv1.0 annot-version=v1.0 ATGGGCATTACCAGCGAGGATCTCGTCCTGGTCCAACCGGCCAAGACCCCAGATGACCCTACCGTCGTCACCGTCAATTGTCCAGATAAGACCGGTCTTG GCTGTGATATCTGCCGTATAATTCTCGAGGTCGGCCTTCGAATTAATCGAGCAGATTTCTCGACGGATGGGAGATGGTGTTATATGGTATTCTGGGTGAC TCCGTACTCGAGCTCCGTTAGAGATGATTGGGATAGCTTGAAGAACCGGCTGTACTATGCTTCTCCTTCCTGCTTGGGTCCTTACTTTTTCGGAACCAGT CCCTCATCTCCTCCCTCTTTGTATCTTCTCAAGATATTCTGTGTTGACAGAAAAGGATTGCTCCATGATGTTACCAAAGTTCTGACACAGCTTGAGTTCA CAATCCAGAGAGTGAAAGTCATGACCACTCCAGATGATCGAGTTGTCGACTTGTTCCTCGTTACAGACTGCCTGGAGCTTTTACATACCAAAGAAAGGCA GGATGACACCTGCAGATATCTGGTTGATGTTTTTAAAGAGAATTGTATAAGCTGTGATTTGCAAGTGGCGGGGCCAGAGTATGAAAGTCTACAAGCTTTC TCTTCAATCCCTGAGAGTGTCGCAGAAGAATTGTTTAGTTCTGAGCTCTTTGAAATAGAGTCTCTGGACGAATCCCCAGGGGCAGCCGAAAAGTTGGAGA AGGCCACGATTACAGTTGACAATCAGTTGAGTCCTGCTCATACATTGCTTCAAATAGAGTGTGTCGATCAAAAAGGCCTGTTTTATGACATCTTGAGGAC GTCAAAGGAATGCAATATATGGGTAGCTTATGGTAGATTCTCTCAAAGTCAAAAAATGTACCGCAACCTGGATCTGATCATTCAGCAAACTAACGGGAAA AAAATTGTGGACCCTAAGCATCTTGATATCTTATGCACTCGTTTGAAACAAGAGATGCTTCATCCACTTCAAGCGATCATCGTGAGCCGAGGTCCGGATA CTGAACTTTTGGTTGCCAACCCAGTTGAGGTGTCCGGGAAGGGAAGGCCTCGTGTTTTCTATGATGTTACATCAGCTCTGAAGAAGTCCGGAATATGCAT ATTCTCGGCCGAAATCGGGAGGCACTCGACACAGGACCGGGAGTGGGAAGTGTACAGATTTCTGTTGGATGAGAGCCATGAATTCCCACTGTCAAGCCCT GAAGCAAGAAGAAGGGTGGTGAAGAGAGTTTGGAAAACGTTGATGGGATGGTGA
AA sequence Show only first row Show all	>Lus10001702 pacid=23171920 polypeptide=Lus10001702 locus=Lus10001702.g ID=Lus10001702.BGIv1.0 annot-version=v1.0 MGITSEDLVLVQPAKTPDDPTVVTVNCPDKTGLGCDICRIILEVGLRINRADFSTDGRWCYMVFWVTPYSSSVRDDWDSLKNRLYYASPSCLGPYFFGTS PSSPPSLYLLKIFCVDRKGLLHDVTKVLTQLEFTIQRVKVMTTPDDRVVDLFLVTDCLELLHTKERQDDTCRYLVDVFKENCISCDLQVAGPEYESLQAF SSIPESVAEELFSSELFEIESLDESPGAAEKLEKATITVDNQLSPAHTLLQIECVDQKGLFYDILRTSKECNIWVAYGRFSQSQKMYRNLDLIIQQTNGK KIVDPKHLDILCTRLKQEMLHPLQAIIVSRGPDTELLVANPVEVSGKGRPRVFYDVTSALKKSGICIFSAEIGRHSTQDREWEVYRFLLDESHEFPLSSP EARRRVVKRVWKTLMGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10001702 [exp]	0	1
AT1G25400			unknown protein		Lus10034335 [exp]	10.8	0.7221
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10021562 [exp]	27.5	0.5940
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10001703 [exp]	39.0	0.5452
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10015742 [exp]	44.2	0.5750
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Lus10022594 [exp]	62.0	0.5199
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10008232 [exp]	91.8	0.5320

Compare expression of checked genes

Lus10001702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.