Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55400 818 / 0 OVA1 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) AT4G13780 124 / 2e-29 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) AT5G16715 43 / 0.0008 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005156 [exp] 954 / 0 AT3G55400 931 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Lus10001706 [exp] 196 / 5e-60 AT3G55400 119 / 3e-32 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Lus10010450 [exp] 109 / 8e-25 AT4G13780 937 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10022571 [exp] 108 / 3e-24 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10016658 [exp] 107 / 9e-24 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207300 [exp] 846 / 0 AT3G55400 935 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Potri.017G057700 [exp] 119 / 1e-27 AT4G13780 1255 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.001G317500 [exp] 114 / 5e-26 AT4G13780 1260 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.004G090732 [exp] 43 / 0.0005 AT5G16715 590 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.017G124500 [exp] 43 / 0.001 AT5G16715 1627 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF09334 [flax] [poplar] tRNA-synt_1g tRNA synthetases class I (M)
Representative CDS sequence Show only first row Show all	>Lus10001704 pacid=23171909 polypeptide=Lus10001704 locus=Lus10001704.g ID=Lus10001704.BGIv1.0 annot-version=v1.0 ATGTGCTACTCAATTCAAAACACTCTTTCCCTCTTAAACCCTCTCACTTCCTTCGCTACGAAATCAACCCATTTTAGGAATCGCCTCCCTTTCCGCCGCA GGTTACTGCTTTCTTCTTCATACTCCAAATCGGGGAGAGCCCATTTCTGCAGTGGCAGCGCCGCGGATTCCCAAGAAGCAGCTTCAGCTGCTGAGACATT TGTGCTCACTACCCCTCTCTACTACGTAAATGCCGCTCCTCACAGGGGAAGCGCTTACACAACCATTGCTGCTGATGCTATTACCCGCTTTCAGGTTATA CTAGTCGCTGGCACTGACGAGCATGGGGAGAAAATTGCTTCAGCTGCTGCTGCCTGTGGTGCTACCCCAACTGAGCATTGCGACATTGTATCTCAAGCTT ACAAGAGCTTGTGGAAAGATTTGGACATTTCATACAACAAGTTCATTCGAACTACTGATCTCAAGCATGAAGCAATCGTCAAAGAGTTCTATTCTAGGGT ACTTGCCAATGGTGACATTTACCATGCTGACTACGAGGGACTCTACTGTGTCAACTGCGAGGAGTATAAGGATGAGAAGGAACTACTTGAGAACAAATGC TGCCCTGTCCACTTAAAACCATGTATAGAGCGCAAAGAGGAAAATTATTTCTTTGCTTTGTCTAAGTACCAACAAAAATTGGAAGAAACTTTGTCGTCGA ATCCAAATTTTGTACAGCCTTCATATCGTTTGAATGAGGTGCAAAGTTGGATCAAAAGTGGCTTGAAAGACTTCTCAATTTCTCGAGCATCTGTGGAGTG GGGAATTCCAGTTCCCGATGACAAAAGACAGACAATATATGTCTGGTTTGATGCTTTACTTGGCTCTGCAAAGGATAATGGACACTCTAATTTACAGGTG GCTGTTTCGGCTGGTTGGCCTGCATCACTGCATTTGTTTGGCAAGGATATTTTACGTTTTCATGCAGTTTACTGGCCTGCTATGCTCATGTCTGCGAGAG TTGACCTTCCAAAAATGGTGTTTGGGCATGGGTTTCTCACTAAGGACGGCATGAAGATGGGGAAGTCATTGGGAAATACACTCGAACCGAATGAATTGGT TCAAAAATTTGGGTCTGATGCTGTCAGGTACTTCTTCCTTAGGGAAGTTGAATTCGGTAATGATGGGGATTATTCAGAAGATCGTTTCATTAACATTGTG AATGCACATCTCGCCAATACCATAGGAAACCTCCTTAACCGTACTCTTGGACTTCTCAGAAAGAATTGCCAATCAACTTTAGTAATGGACTCATATACTG CAGCTGAAGGAAGTGCCATAAAAAACACTGTCGAAATTCTGGTTGAGAAAGCTCGGTCAAATTATGAAAACCTATCCCTATCGACAGCCTGCGAGGCTGT ACTTGAGATTGGTAATTCTGGAAATTTGTACATGGATGAACGTGCACCGTGGTCTCTGTTTAAGCAGGGGGGAGCTGCTTCTGAAGCTGCTGCCAAGATG GGGATTTTGGTTGACCAGTTGAGTGATGTGAAACAGGATCTTGTAATTATTCTGGAAGCAATGAGGATCATAGCCATTGTGTTATCACCTGTAGCACCAC GGTTGAGCTGCAGAATATATACACAGCTCGGCTACTCGGAGGACCAATTTGCAACTGTGACATGGGGAGAGACAAAATGGGGTGGGTTGAAAGGTGGTCA AGTGATGGGTCAACCTAGTCCTGTGTTTGCGAGGATTGAGAACCCAGCAGAAGTAGAAGCTGGTTCTTCTGACGCATCAGCAGCAGCTAAGCCGCAGTTG AAAAGCAAGAAGCAAAAGAAGAAACCTCAGCCACAAGTAGCTGCTGAGGCTTAG
AA sequence Show only first row Show all	>Lus10001704 pacid=23171909 polypeptide=Lus10001704 locus=Lus10001704.g ID=Lus10001704.BGIv1.0 annot-version=v1.0 MCYSIQNTLSLLNPLTSFATKSTHFRNRLPFRRRLLLSSSYSKSGRAHFCSGSAADSQEAASAAETFVLTTPLYYVNAAPHRGSAYTTIAADAITRFQVI LVAGTDEHGEKIASAAAACGATPTEHCDIVSQAYKSLWKDLDISYNKFIRTTDLKHEAIVKEFYSRVLANGDIYHADYEGLYCVNCEEYKDEKELLENKC CPVHLKPCIERKEENYFFALSKYQQKLEETLSSNPNFVQPSYRLNEVQSWIKSGLKDFSISRASVEWGIPVPDDKRQTIYVWFDALLGSAKDNGHSNLQV AVSAGWPASLHLFGKDILRFHAVYWPAMLMSARVDLPKMVFGHGFLTKDGMKMGKSLGNTLEPNELVQKFGSDAVRYFFLREVEFGNDGDYSEDRFINIV NAHLANTIGNLLNRTLGLLRKNCQSTLVMDSYTAAEGSAIKNTVEILVEKARSNYENLSLSTACEAVLEIGNSGNLYMDERAPWSLFKQGGAASEAAAKM GILVDQLSDVKQDLVIILEAMRIIAIVLSPVAPRLSCRIYTQLGYSEDQFATVTWGETKWGGLKGGQVMGQPSPVFARIENPAEVEAGSSDASAAAKPQL KSKKQKKKPQPQVAAEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10001704 [exp]	0	1
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10040883 [exp]	9.4	0.8434
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10038185 [exp]	10.4	0.8300
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10034490 [exp]	11.7	0.8050
AT1G24090			RNase H family protein (.1)		Lus10033508 [exp]	15.2	0.8355
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004935 [exp]	16.9	0.8209
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10032567 [exp]	17.3	0.8403
AT3G52170			DNA binding (.1.2)		Lus10017453 [exp]	18.9	0.8078
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030829 [exp]	22.0	0.7870
AT2G46090			Diacylglycerol kinase family p...		Lus10007917 [exp]	23.7	0.7554
AT3G03770			Leucine-rich repeat protein ki...		Lus10033407 [exp]	24.8	0.7966

Compare expression of checked genes

Lus10001704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.