Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28760 501 / 0 UXS6 UDP-XYL synthase 6 (.1.2.3) AT3G46440 498 / 8e-180 UXS5 UDP-XYL synthase 5 (.1.2) AT5G59290 498 / 9e-180 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G62830 411 / 3e-144 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47650 411 / 4e-144 UXS4 UDP-xylose synthase 4 (.1.2) AT3G53520 399 / 1e-139 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT2G27860 99 / 1e-23 AXS1 UDP-D-apiose/UDP-D-xylose synthase 1 (.1) AT1G08200 97 / 5e-23 AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) AT5G28840 89 / 4e-20 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) AT2G28755 79 / 3e-19 UDP-D-glucuronate carboxy-lyase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001707 [exp] 533 / 0 AT2G28760 636 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005155 [exp] 531 / 0 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10040847 [exp] 496 / 7e-179 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005450 [exp] 493 / 9e-178 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10003605 [exp] 417 / 5e-146 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10030368 [exp] 414 / 2e-145 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006510 [exp] 395 / 3e-138 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024436 [exp] 393 / 5e-137 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10015038 [exp] 391 / 3e-136 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207200 [exp] 514 / 0 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.008G053100 [exp] 506 / 0 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 504 / 0 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.002G204400 [exp] 411 / 3e-144 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 410 / 6e-144 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G080500 [exp] 399 / 1e-139 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 397 / 6e-139 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.005G053000 [exp] 101 / 8e-25 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.013G040600 [exp] 100 / 3e-24 AT5G28840 723 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.004G189900 [exp] 95 / 3e-22 AT1G08200 717 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10001705 pacid=23171923 polypeptide=Lus10001705 locus=Lus10001705.g ID=Lus10001705.BGIv1.0 annot-version=v1.0 ATGTCCTGTTTAGATGTGACGGAGCCATTGCTGGTTGAAGTTGATCAAATATACCACCTTGCCTGCCCAGCTTCTCCGATATTCTACAAGTACAACCCTG TAAAGACCATTAAGACAAATGTGATTGGTACATTGAACATGTTGGGGCTTGCCAAGAGAGTTGGAGCTAGGATTCTGTTGACCTCAACTTCTGAGGTTTA TGGAGACCCCCTTATCCATCCTCAAACTGAGAGCTACTGGGGAAATGTCAATCCTATTGGAGTTAGGAGTTGCTATGATGAGGGAAAGCGAGTTGCAGAA ACTTTGATGTTTGACTATCACAGGCAACACGGAATTGAAATCAGAATTGCCAGAATTTTCAACACTTATGGACCTCGCATGAACATTGATGATGGGCGTG TTGTCAGTAATTTCATTGCTCAGGCTCTTCGCAATGAGCCATTGACTGTTCAAGCCCCTGGAACACAAACCCGAAGCTTCTGTTATGTCTCCGACATGGT CAACGGTCTGATCAAGTTGATGGAAGGAGAAAACACAGGACCAATCAACATTGGGAATCCAGGTGAATTCACCATGATAGAGCTTGCTGAGAACATCAAA GAGCTCATCAATCCTAACGTGGATATAGCAATGGTGGAGAATACGCCCGACGATCCTCGCCAGAGAAAGCCAGACATCACAAAGGCCAAGGAAGTGCTGG GATGGGAGCCGAAGATCAAGCTGCGAGATGGGCTTCCCCTTATGGAGGAAGATTTCAGGCTACGACTTGGAGTCCCCAGAAAGAACTGA
AA sequence Show only first row Show all	>Lus10001705 pacid=23171923 polypeptide=Lus10001705 locus=Lus10001705.g ID=Lus10001705.BGIv1.0 annot-version=v1.0 MSCLDVTEPLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQTESYWGNVNPIGVRSCYDEGKRVAE TLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRNEPLTVQAPGTQTRSFCYVSDMVNGLIKLMEGENTGPINIGNPGEFTMIELAENIK ELINPNVDIAMVENTPDDPRQRKPDITKAKEVLGWEPKIKLRDGLPLMEEDFRLRLGVPRKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001705 [exp]	0	1
AT3G27200			Cupredoxin superfamily protein...		Lus10041570 [exp]	1.4	0.9754
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001707 [exp]	2.0	0.9753
AT3G13130			unknown protein		Lus10016611 [exp]	3.9	0.9723
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10005155 [exp]	4.5	0.9398
AT5G40630			Ubiquitin-like superfamily pro...		Lus10032107 [exp]	4.7	0.9485
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10042845 [exp]	4.9	0.9605
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002978 [exp]	6.3	0.9637
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040697 [exp]	6.9	0.9359
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10001664 [exp]	7.7	0.9625
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10010268 [exp]	9.2	0.9458

Compare expression of checked genes

Lus10001705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.