Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55400 117 / 1e-31 OVA1 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001704 [exp] 191 / 5e-59 AT3G55400 891 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Lus10005156 [exp] 166 / 4e-49 AT3G55400 931 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207300 [exp] 123 / 5e-34 AT3G55400 935 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001706 pacid=23171906 polypeptide=Lus10001706 locus=Lus10001706.g ID=Lus10001706.BGIv1.0 annot-version=v1.0 ATGGGGATTTTGGTTGACCAGTTGAGTGATGTGAAACAGGATCTTGTAATTATTCTGGAAGCAATGAGGATCATAGCCATTGTGTTATCACCTGTAGCAC CACGGTTGAGCTGCAGAATATATACACAGCTCGGCTACTCGGAGGACCAATTTGCAACTGTGACATGGGGAGAGACAAAGTGGGGTGGGTTGAAAGGTGG TCAAGTGATGGGTCAACCTAGTCCTGTGTTTGCGAGGATTGAGAACCCAGCAGAAGTAGAAGCTGGTTCTTCTGACGCATCAGCAGCAGCTAAGCCGCAG TTGAAAAGCAAGAAGCAAAAGAAGAAACCTCAGCCACAAGTAGCTGCTGAGGCTTAG
AA sequence Show only first row Show all	>Lus10001706 pacid=23171906 polypeptide=Lus10001706 locus=Lus10001706.g ID=Lus10001706.BGIv1.0 annot-version=v1.0 MGILVDQLSDVKQDLVIILEAMRIIAIVLSPVAPRLSCRIYTQLGYSEDQFATVTWGETKWGGLKGGQVMGQPSPVFARIENPAEVEAGSSDASAAAKPQ LKSKKQKKKPQPQVAAEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10001706 [exp]	0	1
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10040779 [exp]	2.8	0.6621
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042099 [exp]	5.8	0.6219
AT4G10265			Wound-responsive family protei...		Lus10039760 [exp]	9.6	0.6606
AT2G31420	B3		Domain of unknown function (DU...		Lus10009354 [exp]	15.0	0.6594
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007588 [exp]	15.4	0.6677
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030883 [exp]	15.9	0.6557
					Lus10021285 [exp]	20.2	0.6318
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10016490 [exp]	21.5	0.6615
AT3G26010			Galactose oxidase/kelch repeat...		Lus10003692 [exp]	23.2	0.6255
					Lus10038177 [exp]	31.5	0.6168

Compare expression of checked genes

Lus10001706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.