Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28760 637 / 0 UXS6 UDP-XYL synthase 6 (.1.2.3) AT3G46440 629 / 0 UXS5 UDP-XYL synthase 5 (.1.2) AT5G59290 626 / 0 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT2G47650 479 / 2e-169 UXS4 UDP-xylose synthase 4 (.1.2) AT3G62830 478 / 4e-169 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G53520 473 / 4e-167 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT1G08200 127 / 3e-33 AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) AT2G27860 125 / 1e-32 AXS1 UDP-D-apiose/UDP-D-xylose synthase 1 (.1) AT1G53500 112 / 6e-27 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT3G14790 110 / 2e-26 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005155 [exp] 705 / 0 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10040847 [exp] 649 / 0 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005450 [exp] 633 / 0 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10001705 [exp] 533 / 0 AT2G28760 501 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005900 [exp] 530 / 0 AT3G46440 513 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10003605 [exp] 491 / 9e-174 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10030368 [exp] 484 / 1e-171 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024436 [exp] 468 / 4e-165 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10015038 [exp] 464 / 6e-164 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207200 [exp] 678 / 0 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.008G053100 [exp] 665 / 0 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 633 / 0 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.002G204400 [exp] 479 / 1e-169 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 479 / 2e-169 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G080500 [exp] 475 / 3e-168 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 475 / 4e-168 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.009G150600 [exp] 121 / 4e-31 AT1G08200 736 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.004G189900 [exp] 121 / 4e-31 AT1G08200 717 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.005G053000 [exp] 112 / 5e-28 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10001707 pacid=23171903 polypeptide=Lus10001707 locus=Lus10001707.g ID=Lus10001707.BGIv1.0 annot-version=v1.0 ATGGCTCAGACCAATGGAGATCACAACTCTGCTGCTAAGCCACCCCCAACTCCATCTCCATTGAGAAACTCCAAGTTCTTTCAGTCCAACATGAGGATTT TGGTTACTGGAGGAGCTGGGTTTATTGGCTCTCACCTGGTTGACAAGTTGATGGAGAATGAGAAGAATGAGGTGATCGTTGCTGACAATTACTTCACTGG GTCGAAGGACAACCTAAAGAGGTGGATTGGTCATCCCAGATTCGAGCTCATCCGTCACGATGTTACGGAGCCATTGCTGGTTGAAGTTGATCAAATATAC CACCTTGCCTGCCCAGCTTCTCCGATATTCTACAAGTACAACCCTGTAAAGACCATTAAGACAAATGTGATTGGTACATTGAACATGTTGGGGCTTGCCA AGAGAGTTGGAGCCAGGATTCTGTTGACCTCAACTTCTGAGGTTTATGGAGACCCCCTTATCCATCCTCAAACTGAGAGCTACTGGGGGAATGTCAATCC TATTGGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTTGCGGAAACTTTGATGTTTGACTATCACAGGCAACACGGAATTGAAATCAGAATTGCCAGA ATTTTCAACACTTATGGACCTCGCATGAACATTGATGATGGGCGTGTTGTCAGTAATTTCATTGCTCAGGCTCTTCGCAATGAGCCATTGACTGTTCAAG CACCCGGAACACAAACCCGAAGCTTCTGTTATGTCTCCGACATGGTCAACGGTCTGATCAAGTTGATGGAAGGAGAAAACACAGGACCAATCAACATTGG GAATCCAGGTGAATTCACCATGATAGAGCTTGCTGAGAACATCAAAGAGCTCATCAATCCTAACGTGGATATAGCAATGGTGGAGAATACGCCCGACGAT CCTCGCCAGAGAAAGCCAGACATCACAAAGGCCAAGGAAGTGCTGGGATGGGAGCCGAAGATCAAGCTGCGAGATGGGCTTCCCCTTATGGAGGAAGATT TCAGGCTACGACTTGGAGTCCCCAGAAAGAACTGA
AA sequence Show only first row Show all	>Lus10001707 pacid=23171903 polypeptide=Lus10001707 locus=Lus10001707.g ID=Lus10001707.BGIv1.0 annot-version=v1.0 MAQTNGDHNSAAKPPPTPSPLRNSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKRWIGHPRFELIRHDVTEPLLVEVDQIY HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQTESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR IFNTYGPRMNIDDGRVVSNFIAQALRNEPLTVQAPGTQTRSFCYVSDMVNGLIKLMEGENTGPINIGNPGEFTMIELAENIKELINPNVDIAMVENTPDD PRQRKPDITKAKEVLGWEPKIKLRDGLPLMEEDFRLRLGVPRKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001707 [exp]	0	1
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10042845 [exp]	1.0	0.9845
AT5G40630			Ubiquitin-like superfamily pro...		Lus10032107 [exp]	1.7	0.9660
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001705 [exp]	2.0	0.9753
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	4.5	0.9515
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10038370 [exp]	4.5	0.9576
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10041481 [exp]	4.9	0.9583
AT1G51640		ATEXO70G2	exocyst subunit exo70 family p...		Lus10035750 [exp]	6.2	0.9323
AT3G27200			Cupredoxin superfamily protein...		Lus10041570 [exp]	6.5	0.9556
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10039899 [exp]	9.5	0.9516
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10005155 [exp]	9.9	0.9184

Compare expression of checked genes

Lus10001707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.