Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55390 161 / 3e-50 Uncharacterised protein family (UPF0497) (.1) AT1G79780 58 / 1e-10 Uncharacterised protein family (UPF0497) (.1) AT1G17200 49 / 4e-07 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT3G16300 49 / 5e-07 Uncharacterised protein family (UPF0497) (.1) AT2G36330 48 / 1e-06 Uncharacterised protein family (UPF0497) (.1) AT2G38480 47 / 2e-06 Uncharacterised protein family (UPF0497) (.1) AT5G62820 45 / 2e-05 Uncharacterised protein family (UPF0497) (.1) AT5G40300 42 / 9e-05 Uncharacterised protein family (UPF0497) (.1) AT4G16442 42 / 0.0001 Uncharacterised protein family (UPF0497) (.1) AT5G54980 39 / 0.0008 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005154 [exp] 276 / 3e-95 AT3G55390 233 / 2e-78 Uncharacterised protein family (UPF0497) (.1) Lus10026196 [exp] 52 / 4e-08 AT1G17200 241 / 1e-81 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10042471 [exp] 52 / 4e-08 AT1G17200 242 / 6e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10014537 [exp] 42 / 0.0003 AT3G16180 174 / 4e-49 Major facilitator superfamily protein (.1) Lus10031303 [exp] 41 / 0.0003 AT2G39530 87 / 2e-21 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207000 [exp] 187 / 2e-60 AT3G55390 243 / 8e-83 Uncharacterised protein family (UPF0497) (.1) Potri.008G053500 [exp] 178 / 5e-57 AT3G55390 238 / 6e-81 Uncharacterised protein family (UPF0497) (.1) Potri.001G436400 [exp] 54 / 7e-09 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.011G140200 [exp] 53 / 2e-08 AT1G17200 223 / 3e-74 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.016G128200 [exp] 52 / 2e-08 AT2G38480 164 / 2e-51 Uncharacterised protein family (UPF0497) (.1) Potri.003G050400 [exp] 52 / 5e-08 AT3G16300 137 / 2e-40 Uncharacterised protein family (UPF0497) (.1) Potri.001G188000 [exp] 40 / 0.0003 AT3G16300 131 / 5e-38 Uncharacterised protein family (UPF0497) (.1) Potri.012G079800 [exp] 39 / 0.0009 AT2G36330 218 / 3e-70 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10001709 pacid=23171908 polypeptide=Lus10001709 locus=Lus10001709.g ID=Lus10001709.BGIv1.0 annot-version=v1.0 ATGTCGTCGCCTCAACCTCTTCGCGGCAGCAACGGGGACACGCCCTCTACCCACCACCACCATCGGACACCCTCTCCCCACCATCGAATCTCCGCTCCTC ACTTCCACTCCAGCACCTCCGTACACAGGATCCGGCGATTCAACTCGCTCATTCTCCTCCTCCGCCTCCTCGCCTTCTGCTTCTCCCTCACTTCCGCCGT CTTCATGCTCACCAACTCCCGCGGCTCCGATTCCCCTTCCTGGCGCGACTTCGATGCCTTTAGATACGTACTGGCTGCGAACGCAATCGTGGCGATATAC TCCACCTTCGAAGTGGCGGCGTCGGCGTGGGAGGTTATCAAGAGTGTAACGCTGTTCCCGGAGGTGCTGCAAGTGTGGTTCGATTTCGGCCACGACCAGA TATTCGCCTACCTTGTGCTCTCTGCCAACTCCGCAGCTACCGGGATGGCCAAGTCGCTGAGGGAGGGTGACACTTGCAGATCGTTCAGCGCATTCTGCCT ACAATCGGACATCTCGATTGCGCTTGGGTTCGTGGGGTTCCTGTTCCTAGGGTTTACCTGCTTGTTTTCGGGCTATCGGGTCGTCTGTTTTCTAATCAAC GGCTCCCGTTTCCACCTCTGA
AA sequence Show only first row Show all	>Lus10001709 pacid=23171908 polypeptide=Lus10001709 locus=Lus10001709.g ID=Lus10001709.BGIv1.0 annot-version=v1.0 MSSPQPLRGSNGDTPSTHHHHRTPSPHHRISAPHFHSSTSVHRIRRFNSLILLLRLLAFCFSLTSAVFMLTNSRGSDSPSWRDFDAFRYVLAANAIVAIY STFEVAASAWEVIKSVTLFPEVLQVWFDFGHDQIFAYLVLSANSAATGMAKSLREGDTCRSFSAFCLQSDISIALGFVGFLFLGFTCLFSGYRVVCFLIN GSRFHL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55390			Uncharacterised protein family...		Lus10001709 [exp]	0	1
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10015354 [exp]	4.2	0.8664
AT4G27890			HSP20-like chaperones superfam...		Lus10027048 [exp]	5.3	0.8378
AT1G71690			Protein of unknown function (D...		Lus10003512 [exp]	5.5	0.8633
AT3G53810			Concanavalin A-like lectin pro...		Lus10040774 [exp]	6.6	0.8509
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Lus10004846 [exp]	7.1	0.8562
AT2G18540			RmlC-like cupins superfamily p...		Lus10041722 [exp]	7.2	0.8201
AT3G57120			Protein kinase superfamily pro...		Lus10027054 [exp]	15.5	0.8434
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10033079 [exp]	16.5	0.8152
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10001902 [exp]	16.8	0.8434
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001418 [exp]	20.8	0.8144

Compare expression of checked genes

Lus10001709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.