Plant FIBer expression Database

Lus10001710 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G28720 128 / 6e-34 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033020
[exp]
196 / 7e-60 AT3G28720 599 / 0.0 unknown protein
Lus10000345
[exp]
50 / 2e-07 AT5G01650 52 / 2e-11 Tautomerase/MIF superfamily protein (.1.2)
Lus10024539
[exp]
0 / 1 ND 51 / 4e-07
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G123900
[exp]
144 / 1e-39 AT3G28720 852 / 0.0 unknown protein
Potri.017G078700
[exp]
130 / 1e-34 AT3G28720 823 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10001710 pacid=23171914 polypeptide=Lus10001710 locus=Lus10001710.g ID=Lus10001710.BGIv1.0 annot-version=v1.0
ATGGACACCTTCATCACCATCCAATCCCACATCAACCCACATGCCTCTAACGATTCCTTCGAATCTCTCCCTTCCTCAATCAAGAAATCCCTCTCTTCCC
TTCTCCACTCCACAAACACCGCCAATTCCTTAATTTCCTCCCTCTCTCTCCACCTCTGCCTCGTCGGCTTCGCCTTCCCCTCCGCTGACTCCTCCGCCAG
CATCCTCTCCTCCTTCTTTTCCTCCACTCATACCTCCAACCACTTCCACGTCATCACTCTCGATCCCGTCCCTCTTCACAAAAACTCCCACCGCCTTGCC
CTCCGACACTCTCCTCATCTCGACGTCTCCCACTTCCCTCCTTTTTTCGCATATCGTCTCTCTGATGCCATTAAATCAGCCATCTCCTCCACCCAATCCC
CCGGCGACTCCTCCCATGGGTTTACCAAATGCTCCGGCATAATTTGGACTGACAAGGAGAGGTATATCTGGATTGATCTATCCGTCGGCCCTGTGGATTA
TGTCCCGACTTTATCGGGCGATGGGGTTTTGCCCAGAGGCGAATTTCGCCCCCTTGCTGCTATGCACGACCGCCCAAAGTCGGATAAGGCTCTCGATTTC
ATGTTTCTGTTTCCTTTTTTTAAACCGCCTCGATTCCGCCTTTTCCGTCTCGGCGTCGAGGAGGCGTTCGCCGCGACGATTCGGCAACAATTCGGCGACG
CTCCGCCTTAA
AA sequence
>Lus10001710 pacid=23171914 polypeptide=Lus10001710 locus=Lus10001710.g ID=Lus10001710.BGIv1.0 annot-version=v1.0
MDTFITIQSHINPHASNDSFESLPSSIKKSLSSLLHSTNTANSLISSLSLHLCLVGFAFPSADSSASILSSFFSSTHTSNHFHVITLDPVPLHKNSHRLA
LRHSPHLDVSHFPPFFAYRLSDAIKSAISSTQSPGDSSHGFTKCSGIIWTDKERYIWIDLSVGPVDYVPTLSGDGVLPRGEFRPLAAMHDRPKSDKALDF
MFLFPFFKPPRFRLFRLGVEEAFAATIRQQFGDAPP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G28720 unknown protein Lus10001710
[exp]
0 1
AT5G13930 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE ... Lus10011744
[exp]
24.8 0.4842
AT4G22880 TT18, TDS4, ANS... TANNIN DEFICIENT SEED 4, ANTHO... Lus10006709
[exp]
45.8 0.4723
AT4G22880 TT18, TDS4, ANS... TANNIN DEFICIENT SEED 4, ANTHO... Lus10014134
[exp]
47.5 0.4780
AT3G53740 Ribosomal protein L36e family ... Lus10040766
[exp]
50.0 0.4981
AT5G60900 RLK1 receptor-like protein kinase 1... Lus10032438
[exp]
113.3 0.4273
AT5G52790 CBS domain-containing protein ... Lus10027527
[exp]
142.0 0.4231
AT5G59120 ATSBT4.13 subtilase 4.13 (.1) Lus10000434
[exp]
145.1 0.4203
AT1G47710 Serine protease inhibitor (SER... Lus10009906
[exp]
183.9 0.4208

Lus10001710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.