Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36690 193 / 1e-59 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 180 / 7e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 173 / 3e-52 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 170 / 5e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G60290 167 / 1e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 166 / 3e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07480 164 / 8e-49 KUOX1 KAR-UP oxidoreductase 1 (.1) AT1G17010 157 / 5e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G16330 150 / 2e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G78550 148 / 2e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030185 [exp] 177 / 8e-54 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 172 / 3e-51 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023890 [exp] 172 / 3e-51 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 169 / 2e-50 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 167 / 8e-50 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10018949 [exp] 155 / 1e-45 AT2G44800 148 / 1e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032502 [exp] 155 / 4e-45 AT5G07480 396 / 3e-138 KAR-UP oxidoreductase 1 (.1) Lus10032574 [exp] 155 / 6e-45 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10022292 [exp] 154 / 2e-44 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G048700 [exp] 314 / 4e-107 AT2G36690 255 / 3e-82 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048900 [exp] 310 / 4e-105 AT2G36690 250 / 5e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G049000 [exp] 223 / 7e-72 AT2G36690 209 / 5e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 187 / 9e-58 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 182 / 9e-56 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 181 / 2e-55 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G029700 [exp] 179 / 5e-54 AT2G36690 478 / 1e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G231500 [exp] 179 / 6e-54 AT2G36690 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 177 / 7e-54 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 170 / 4e-51 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10001711 pacid=23142969 polypeptide=Lus10001711 locus=Lus10001711.g ID=Lus10001711.BGIv1.0 annot-version=v1.0 ATGCTAGAAGCCGCGAGGGAGTTCTTCGAGATGGCCGAGGAGGACAAGGACGAGTATCGTGATAGCACGAAAGGGGTCTTGGAACCGATCCGGTGTGGGA CCAGCTTCAACTCGGCTGTGGAGAAGGTGTTTTGTTGGAAGGATTTCTTGAAGGTGTTTGTTCATCCTGTTTTCCACTCTCCATCTAAGCCTCCTGGCTT CAGCAAGGTACTCGAAGAGTACTCAAGCAGAGCAAGAGAAGTGGCCAAACAACTCCTCCGAGGAATCTCGGAGAGCTTAGGTTTACAACCAGACTACATC TCCCAACAACTCGACTTAGAACAAGGGATGTTCCAATTCCTTGCCGCCAACTTCTACCCTCCGTGCCCACAGCCAGAGCTCGCAATGGGAATGGCCCCAC ACTCCGACCACGGCCTCATCACACTCCTAATCCAAAACAACATCGACGGCCTCCAAATCCACCACCATGGCCAGTGGGTCGACGTTGGAAACGTCGCCCC GGGGGCTTTCCTCGTCAACACTGCCGACCACCTCGAGATTTTGAGCAATGGGAAGTACAAGAGCGTTCTTCACCGGGCGATGGTGAACAAGGAGGTGATG AGGATCTCCGTAGCCATTGCACACGCACCGTCGCTCGATTCGGTAGTAGCTCCAGCGCCGGAGTCGCTCGAACGTGATAGAACTCCGCCGGCGTTTAAGG GGATGAAGTATCGAGACTACTTGTTGGCTCAACAGAGCAAACAACTTGATGGCAAGTCTAGCTTGGAGACTGTTCGAGTTTGA
AA sequence Show only first row Show all	>Lus10001711 pacid=23142969 polypeptide=Lus10001711 locus=Lus10001711.g ID=Lus10001711.BGIv1.0 annot-version=v1.0 MLEAAREFFEMAEEDKDEYRDSTKGVLEPIRCGTSFNSAVEKVFCWKDFLKVFVHPVFHSPSKPPGFSKVLEEYSSRAREVAKQLLRGISESLGLQPDYI SQQLDLEQGMFQFLAANFYPPCPQPELAMGMAPHSDHGLITLLIQNNIDGLQIHHHGQWVDVGNVAPGAFLVNTADHLEILSNGKYKSVLHRAMVNKEVM RISVAIAHAPSLDSVVAPAPESLERDRTPPAFKGMKYRDYLLAQQSKQLDGKSSLETVRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10001711 [exp]	0	1
AT4G01140			Protein of unknown function (D...		Lus10007859 [exp]	2.8	0.8165
AT1G26920			unknown protein		Lus10012840 [exp]	3.5	0.7928
AT1G70590			F-box family protein (.1)		Lus10004621 [exp]	3.5	0.8018
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10000963 [exp]	3.7	0.8301
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006172 [exp]	4.0	0.7977
AT1G52342			unknown protein		Lus10043217 [exp]	7.4	0.7939
AT1G48440			B-cell receptor-associated 31-...		Lus10040126 [exp]	10.2	0.7849
AT4G17370			Oxidoreductase family protein ...		Lus10028967 [exp]	19.4	0.7316
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10042921 [exp]	20.5	0.7460
AT3G23880			F-box and associated interacti...		Lus10027780 [exp]	20.7	0.7265

Compare expression of checked genes

Lus10001711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.