Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05100 468 / 5e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004147 [exp] 624 / 0 AT3G05100 471 / 6e-168 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033850 [exp] 506 / 0 AT3G05100 452 / 8e-161 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019000 [exp] 500 / 2e-179 AT3G05100 462 / 1e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046300 [exp] 501 / 7e-180 AT3G05100 484 / 2e-173 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G034000 [exp] 498 / 6e-179 AT3G05100 481 / 5e-172 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001712 pacid=23142974 polypeptide=Lus10001712 locus=Lus10001712.g ID=Lus10001712.BGIv1.0 annot-version=v1.0 ATGACGATAATGGCGAATTTCTTCTCATCTTCATCTTCATCTTCTTCCTCTTCTTCTTCATCGCCACTGCAGAAAGGGATAGTCGTCACAGTTCCGGCCC TCGTCCTCGCCGTCTCCATCGGAGCTCTCACTCTCTTCTTCCTCGCTTCTTCTCTCTCCGCTCCTTGCTCCTGCTACATCCCTCCGCCGCCGGATGGCGG CGGCGTCGAAGCCCTCACCGTTGGGGAGAAGGTGTCGGCGACGGCGGAGGATATCGAGTGGGTGAGGGATCAGATCCGGGGGAACGGTTTACATATGCAG GATAATGTTCTTCGTAAGGGGATTAATCCGCGGACTAGGGCTCAGCAGCTGCAAGATCTCGTTCAGTACAAGGGCATCTCGCACTATGAAAGATCTGATT CGGGTAACCATACAGCCCTCCCTTGCCCAGGGGAGCTCCTAGTGGAAGAGCACCACAGCAACTATGGAGAGCCATGGGCAGGAGGGAGGGACGTGTTCGA GTTCCTAGCCGAGGCCAGTAAGCTCTCCCCAAATTCTCAGGTTCTCGAGATAGGCTGCGGGACTTTACGCGTTGGCCTGCATTTCATACGGTACCTTGCC CCCGGACGGTTCCACTGTCTAGAAAGAGACGAGCTCTCTCTAATGGCTGCTCTTAGATACGAGCTTCCATCTCAGGGCCTTTTACATAAGCGCCCAGTGA TAGTTCGCGGAGAAGACATGGACTTCACTAGATTCGATCCGGGAGTTTCTTATGACTTGATCTACGCCAGCGCTGTGTTCCTACACATGCCGGATAGACT CGTGTGGACCGGGTTGGAGAGGCTGGCGAACAAGTTGAAGCCTTACACTGGGAGGATATTCGTGTCGCATAATATCAAGTTCTGTTCCAGATTGGGAGGC GAAGAATGCACGAAGAAGTTGAGCGATTTGGGGCTCGAGTATCTCGGGAAGAAGACTCACGACAGTTTGCTGTTTAATCATTACGAGATTTGGTTTGAGT TCAGACGTTTCAAAGCTTAG
AA sequence Show only first row Show all	>Lus10001712 pacid=23142974 polypeptide=Lus10001712 locus=Lus10001712.g ID=Lus10001712.BGIv1.0 annot-version=v1.0 MTIMANFFSSSSSSSSSSSSSPLQKGIVVTVPALVLAVSIGALTLFFLASSLSAPCSCYIPPPPDGGGVEALTVGEKVSATAEDIEWVRDQIRGNGLHMQ DNVLRKGINPRTRAQQLQDLVQYKGISHYERSDSGNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASKLSPNSQVLEIGCGTLRVGLHFIRYLA PGRFHCLERDELSLMAALRYELPSQGLLHKRPVIVRGEDMDFTRFDPGVSYDLIYASAVFLHMPDRLVWTGLERLANKLKPYTGRIFVSHNIKFCSRLGG EECTKKLSDLGLEYLGKKTHDSLLFNHYEIWFEFRRFKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10001712 [exp]	0	1
AT5G23730		EFO2, RUP2	REPRESSOR OF UV-B PHOTOMORPHOG...		Lus10027454 [exp]	4.2	0.8329
AT5G50335			unknown protein		Lus10001469 [exp]	6.6	0.8452
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10014731 [exp]	14.8	0.8140
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10008528 [exp]	14.9	0.8326
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10005248 [exp]	15.5	0.7945
AT2G24290			Protein of unknown function (D...		Lus10019053 [exp]	17.5	0.7602
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10012056 [exp]	17.9	0.7206
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032260 [exp]	18.0	0.7958
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10030493 [exp]	19.2	0.7970
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Lus10005583 [exp]	22.4	0.7625

Compare expression of checked genes

Lus10001712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.