Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11680 852 / 0 EMB1738, CYP51A2, CYP51G1 embryo defective 1738, CYTOCHROME P450 51A2, CYTOCHROME P450 51G1 (.1) AT3G19270 117 / 2e-28 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT5G45340 115 / 9e-28 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT3G61040 113 / 8e-27 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT4G19230 108 / 3e-25 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT2G32440 107 / 9e-25 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT1G78490 103 / 2e-23 CYP708A3 "cytochrome P450, family 708, subfamily A, polypeptide 3", cytochrome P450, family 708, subfamily A, polypeptide 3 (.1) AT3G14620 99 / 7e-22 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT2G34490 97 / 2e-21 CYP710A2 cytochrome P450, family 710, subfamily A, polypeptide 2 (.1) AT2G28860 97 / 2e-21 CYP710A4 cytochrome P450, family 710, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004146 [exp] 998 / 0 AT1G11680 850 / 0.0 embryo defective 1738, CYTOCHROME P450 51A2, CYTOCHROME P450 51G1 (.1) Lus10021725 [exp] 125 / 3e-31 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10042652 [exp] 121 / 2e-29 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10008423 [exp] 115 / 2e-27 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10035685 [exp] 107 / 1e-24 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10024578 [exp] 107 / 2e-24 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032214 [exp] 105 / 6e-24 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10019858 [exp] 105 / 6e-24 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10032213 [exp] 103 / 1e-23 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G068400 [exp] 862 / 0 AT1G11680 864 / 0.0 embryo defective 1738, CYTOCHROME P450 51A2, CYTOCHROME P450 51G1 (.1) Potri.003G161700 [exp] 858 / 0 AT1G11680 828 / 0.0 embryo defective 1738, CYTOCHROME P450 51A2, CYTOCHROME P450 51G1 (.1) Potri.014G029100 [exp] 127 / 9e-32 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.002G126100 [exp] 124 / 1e-30 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G140900 [exp] 118 / 1e-28 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 116 / 5e-28 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.012G115000 [exp] 115 / 2e-27 AT5G36110 295 / 7e-95 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G134000 [exp] 112 / 1e-26 AT5G36110 559 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.013G106200 [exp] 109 / 2e-25 AT5G36110 492 / 2e-171 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017800 [exp] 108 / 3e-25 AT5G36110 317 / 1e-103 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10001713 pacid=23142971 polypeptide=Lus10001713 locus=Lus10001713.g ID=Lus10001713.BGIv1.0 annot-version=v1.0 ATGGATTTCGATCAGCTGAAGCTGATGAACGTGGGGCTGGTGATAGTGGCGACATTGGTGGTGGCGAAGCTGATTTCGTCACTCCTAATGAGCGGCAGAT CCAAACGCTTACCTCCAAAGGTAAAGCAAGGAATCCCGGTGGTGGGAGGATTGTTGAAGTTTCTGAAAGGTCCGATCTTGATGCTGAGGGAAGAGTATCC TAAACTAGGCGGCGTCTTTACTTTGAATCTGGTGAATAGGAATATCACCTTCCTCATTGGTCCCGAAGTGTCTGCCCATTTCTTCAAGGCTCAAGAGGCT GATCTCAGCCAGCAGGAGGTTTACCAGTTCAATGTCCCGACTTTCGGCCCCGGCGTGGTGTTTGATGTCGATTACTCGATCCGACAGGAGCAGTTCCGAT TCTTTACTGAGTCTCTTCGTGTTAACAAGCTCAAGGGATATGTAGATATGATGGTTACAGAAGCTCAGGATTACTTCTCCAAGTGGGGAGAAAGCGGAGA AGTCGATCTAAAGTACGAACTAGAGCATCTTATCATCCTGACAGCCAGCAGATGCCTACTCGGCCGAGAAGTTCGAGACAAGCTCTTTGATGATGTCTCC TCTCTATTCCACGATCTCGACAACGGAATGCTCCCTGTCAGTGTCCTATTCCCATACCTCCCGATCCCAGCTCACCGTCGTCGTGACCAAGCCCGCAAGA AGCTTGCCAAGATCTTCTCCGACATCATCTCCTCCCGCAAGAAAACCGGCTGCTCCGAGAACGACATGCTCCAGTGTTTCATCGACTCCAAGTACAAAGA CGGCCGCCCCACTACAGAGTCCGAGGTCACCGGCCTCCTCATCGCCGCTCTCTTCGCCGGCCAGCACACCAGTTCCATCACCTCCACCTGGACCGGAGCC TACCTCCTCCGCGACCGGCAGTTCCTCGACAGTGTCGTAAACGAACAGAAGCAGTTACTTGCAAAGCACGGAAACAAAGTCGACCACGATATCCTCTCCG AAATGGACGTTATGTACCGATGCATCAAGGAAGCATTAAGGCTACACCCTCCGCTGATCATGCTGCTCCGAAGCTCCCACAGCGACTTCTCCGTCACAAC GAGAGAAGGGAAAGAGTTCGACATCCCCAAGGGACACATTGTCGCGACCTCTCCGGCATTCGCGAACCGGCTCCCGCACATCTACACCGACCCAGACAGG TACGACCCGGACCGGTTTGCTCCGGGGAGGGAGGAAGACAAGGCTGCAGGGGCATTCTCGTACATATCGTTCGGAGGAGGTAGGCACGGCTGTCTCGGTG AGCCTTTCGCTTACTTGCAGATCAAGGCAATATGGAGCCATTTGCTGAGGAACTTTGAGTTCGAGCTTGTGTCTCCGTTCCCCGAGATCGACTGGAACGC TATGGTGGTTGGTGTGAAAGGGAACGTCATGGTTCGCTACAAGCGCCGAGTTCTTGTAGCTGATGATTAG
AA sequence Show only first row Show all	>Lus10001713 pacid=23142971 polypeptide=Lus10001713 locus=Lus10001713.g ID=Lus10001713.BGIv1.0 annot-version=v1.0 MDFDQLKLMNVGLVIVATLVVAKLISSLLMSGRSKRLPPKVKQGIPVVGGLLKFLKGPILMLREEYPKLGGVFTLNLVNRNITFLIGPEVSAHFFKAQEA DLSQQEVYQFNVPTFGPGVVFDVDYSIRQEQFRFFTESLRVNKLKGYVDMMVTEAQDYFSKWGESGEVDLKYELEHLIILTASRCLLGREVRDKLFDDVS SLFHDLDNGMLPVSVLFPYLPIPAHRRRDQARKKLAKIFSDIISSRKKTGCSENDMLQCFIDSKYKDGRPTTESEVTGLLIAALFAGQHTSSITSTWTGA YLLRDRQFLDSVVNEQKQLLAKHGNKVDHDILSEMDVMYRCIKEALRLHPPLIMLLRSSHSDFSVTTREGKEFDIPKGHIVATSPAFANRLPHIYTDPDR YDPDRFAPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELVSPFPEIDWNAMVVGVKGNVMVRYKRRVLVADD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10001713 [exp]	0	1
AT1G51160			SNARE-like superfamily protein...		Lus10027541 [exp]	1.0	0.9443
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10006062 [exp]	2.0	0.9289
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10029924 [exp]	3.0	0.9233
AT2G46000			unknown protein		Lus10018829 [exp]	3.5	0.9107
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10026663 [exp]	4.6	0.9183
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10010887 [exp]	6.3	0.9213
AT1G33250			Protein of unknown function (D...		Lus10008293 [exp]	6.5	0.9085
AT3G21400			unknown protein		Lus10037507 [exp]	9.8	0.8896
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10007396 [exp]	10.0	0.9212
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002012 [exp]	11.2	0.9185

Compare expression of checked genes

Lus10001713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.